PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pd.00g1027100.m01 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 807aa MW: 87913 Da PI: 6.4204 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 64.8 | 1.2e-20 | 117 | 172 | 1 | 56 |
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 ++k +++t++q++eLe++F+++++p++++r eL+++l+L+++qVk+WFqNrR+++k Pd.00g1027100.m01 117 KKKYHRHTPSQIQELENFFKECPHPDEKQRLELSRRLSLETKQVKFWFQNRRTQMK 172 79999************************************************999 PP | |||||||
2 | START | 174.5 | 6.5e-55 | 326 | 547 | 2 | 206 |
HHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS....SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEE CS START 2 laeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv...dsgealrasgvvdmvlallveellddkeqWdetla....kaetl 82 la +a++elvk+a+a++p+W k s e++n +e++ + + +e r++ +v+ ++ lve+l+d + +W e++ +a+++ Pd.00g1027100.m01 326 LAMAAMDELVKMAQADSPLWIKTSdggtEILNHEEYRAFSCIGTKpcnFVTEGTRDTCMVIINSLALVETLMDAN-RWAEMFSclvaRASVI 416 57799*******************99999999999998776665588889*************************.**************** PP EEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEE CS START 83 evissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwv 167 +vis g galq+m aelq+lsplvp R f+R+++q+++g+w++vdvS+d +q+ +++ + ++++pSg+++++++n+ skvtw+ Pd.00g1027100.m01 417 DVISGGmggtrnGALQVMHAELQVLSPLVPvRPLKFLRFCKQHQEGVWAVVDVSIDINQEGSNTNAFLNCRRFPSGCIVQDMPNNCSKVTWI 508 ******************************************************************************************** PP E-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS START 168 ehvdlkgrlphwllrslvksglaegaktwvatlqrqcek 206 eh +++++++h l+ +l++sg+ +ga++w+atlqrqce+ Pd.00g1027100.m01 509 EHSEYDENTVHHLFWQLLRSGMGFGAQRWLATLQRQCEC 547 *************************************96 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 807 aa Download sequence |
MSFGGLISGG SGNSGGGGAR VVADIAPHTP YMPSGAIAQP HFLTSPVPNS MRSSSALSLS 60 VKNMDGHSEL GLIAENFDPG IIGRMRDDEY ESRSGSDNFE GASGDDQDAG DEQRPRKKKY 120 HRHTPSQIQE LENFFKECPH PDEKQRLELS RRLSLETKQV KFWFQNRRTQ MKTQLERHEN 180 IILRQENDKL RAENGVMKDA MANPVCNSCG GPAIPGQISF EEHQLRIENA RLKDELNRIC 240 TLANKFLGRP ISSLASPISL PNSTSGLELG IGRNGIGGLS AGGSGLPMGL NLGDGVSSSS 300 PMMPLIKSST GMLGNEPYER SMYIDLAMAA MDELVKMAQA DSPLWIKTSD GGTEILNHEE 360 YRAFSCIGTK PCNFVTEGTR DTCMVIINSL ALVETLMDAN RWAEMFSCLV ARASVIDVIS 420 GGMGGTRNGA LQVMHAELQV LSPLVPVRPL KFLRFCKQHQ EGVWAVVDVS IDINQEGSNT 480 NAFLNCRRFP SGCIVQDMPN NCSKVTWIEH SEYDENTVHH LFWQLLRSGM GFGAQRWLAT 540 LQRQCECLAF LISSTNSIED HTGLGTNGKK SMLKLAQRMI DNFCAGVSAS SVRKWDKLCV 600 NNVSEDLRVM ARKSVDDPGE PAGIVLSGST SVWLPVSRHR LFDFLRDEQL RDQWDVLSKT 660 HKMQLMLRIA KSQGGGNCVS LLRANVVDAN ENTMLMLQES WSDASGSLVV YAPVDPASMS 720 AVMRGGDSAY VALLPSGFAI LPGGPPGYGM VKTEGNGCDD GGCFLTVGFQ ILGSNYPAAK 780 LDVQSINTVN TLVSHTIEKI KSALQVP |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G00730.1 | 0.0 | HD-ZIP family protein |