PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pd.00g1019040.m01

Organism

Prunus domestica

Taxonomic ID

3758

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

bHLH

Protein Properties

Length: 569aa MW: 64417.4 Da PI: 8.4363

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pd.00g1019040.m01	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	45.7	1.2e-14	376	423	3	55
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 ++h ++ErrRR+++N++f Lr+l+P +K++Ka+iL ++eY+k+L+ Pd.00g1019040.m01 376 ANHVMAERRRREKLNERFIILRSLVPFV-----TKMDKASILGDTIEYVKQLR 423 5899*********************8.....8***************95 PP

Sequence ? help Back to Top
Protein Sequence Length: 569 aa Download sequence
MAAPPSSSRL RSMLQASVQS VQWTYSLFWQ IYGYYNGAIK TRKTVQPMEV SAEEASLQRS 60 QQLRELYDSL SAGETNQPPA RRPCASLSPE DLTESEWFYL MCVSFSFPPG VGLPGKAYAR 120 RQHVWLTECS YTDGGLHSST RRRRRTRHHR EGSRRQCHGP TYSEAETGRN GQPVPPGPNP 180 PAVSAPAAEP SELMQLEMSE DIRLGSPDDA SNNLDSDFHL LAVSQSRVNP ADQQRQADSY 240 RAESTRRWPS VQEPLSSGLQ PPPQGPLALE ELTHDDTHYS ETVSTILQRQ ATRWTDSSST 300 DHVAYSTQSA FIKWTTRVEN HMLVPIEGTS QWLLKYILFS VPFLHTKYRD ENSPKSHEGD 360 ASTRLRKGTP QDELSANHVM AERRRREKLN ERFIILRSLV PFVTKMDKAS ILGDTIEYVK 420 QLRKKIQDLE ARNVQMEDDQ RSRSSGEIHR SNSMKELRSG LMVVERTRIG PPGSDKRKLR 480 IVEGSGEVSI IESDGLLELQ CPYREGLLLD IMQTLRELRI ETTVVQSSLN NGFFVAELRA 540 KVKENVNGKK ISITEVKRVI NQIIPQSDS

Sequence ? help Back to Top

Protein Sequence Length: 569 aa Download sequence

MAAPPSSSRL RSMLQASVQS VQWTYSLFWQ IYGYYNGAIK TRKTVQPMEV SAEEASLQRS  60
QQLRELYDSL SAGETNQPPA RRPCASLSPE DLTESEWFYL MCVSFSFPPG VGLPGKAYAR  120
RQHVWLTECS YTDGGLHSST RRRRRTRHHR EGSRRQCHGP TYSEAETGRN GQPVPPGPNP  180
PAVSAPAAEP SELMQLEMSE DIRLGSPDDA SNNLDSDFHL LAVSQSRVNP ADQQRQADSY  240
RAESTRRWPS VQEPLSSGLQ PPPQGPLALE ELTHDDTHYS ETVSTILQRQ ATRWTDSSST  300
DHVAYSTQSA FIKWTTRVEN HMLVPIEGTS QWLLKYILFS VPFLHTKYRD ENSPKSHEGD  360
ASTRLRKGTP QDELSANHVM AERRRREKLN ERFIILRSLV PFVTKMDKAS ILGDTIEYVK  420
QLRKKIQDLE ARNVQMEDDQ RSRSSGEIHR SNSMKELRSG LMVVERTRIG PPGSDKRKLR  480
IVEGSGEVSI IESDGLLELQ CPYREGLLLD IMQTLRELRI ETTVVQSSLN NGFFVAELRA  540
KVKENVNGKK ISITEVKRVI NQIIPQSDS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	141	146	RRRRRT
2	382	387	ERRRRE
3	383	388	RRRREK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G09820.1	2e-59	bHLH family protein