PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pd.00g1008540.m01

Organism

Prunus domestica

Taxonomic ID

3758

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

SBP

Protein Properties

Length: 375aa MW: 40809.5 Da PI: 10.0128

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pd.00g1008540.m01	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	138.4	2e-43	73	150	1	78
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 +CqvegC++dls+ak y++rhkvC+ hsk+p+v+v+gleqrfCqqCsrfh+l efD++krsCrrrLa+hnerrrk+q+ Pd.00g1008540.m01 73 RCQVEGCQVDLSDAKAYYSRHKVCSLHSKTPMVIVAGLEQRFCQQCSRFHQLPEFDQGKRSCRRRLAGHNERRRKPQP 150 6**************************************************************************985 PP

Sequence ? help Back to Top
Protein Sequence Length: 375 aa Download sequence
MKSKPHDLRK VEDYLKDGPT SLNGLKFGRK IYFEDASLGA PYKSGSAGSS SSGATPPKKQ 60 RGVNLAQPGQ PPRCQVEGCQ VDLSDAKAYY SRHKVCSLHS KTPMVIVAGL EQRFCQQCSR 120 FHQLPEFDQG KRSCRRRLAG HNERRRKPQP GSILSARFGR LSSSIYENSS RVGSFLMDFT 180 AYPRHSGRDA WATTRTSERV PGNQNSNDTG KFLQHPWQSN SEITPSGLYL QGSAGGTSYP 240 GPGIPPGECV TGVTDSSCAL SLLSSQPWGS RNRVSGVGMN TVINTQGPPV GQPITHAGTS 300 NHFPTTSWGF KGNAGSSSHE MLPDLGLGQM SQPPLSTQYS GVLELSQQSS RRQQQMELGH 360 TRGYDTSSQH IHWSL

Sequence ? help Back to Top

Protein Sequence Length: 375 aa Download sequence

MKSKPHDLRK VEDYLKDGPT SLNGLKFGRK IYFEDASLGA PYKSGSAGSS SSGATPPKKQ  60
RGVNLAQPGQ PPRCQVEGCQ VDLSDAKAYY SRHKVCSLHS KTPMVIVAGL EQRFCQQCSR  120
FHQLPEFDQG KRSCRRRLAG HNERRRKPQP GSILSARFGR LSSSIYENSS RVGSFLMDFT  180
AYPRHSGRDA WATTRTSERV PGNQNSNDTG KFLQHPWQSN SEITPSGLYL QGSAGGTSYP  240
GPGIPPGECV TGVTDSSCAL SLLSSQPWGS RNRVSGVGMN TVINTQGPPV GQPITHAGTS  300
NHFPTTSWGF KGNAGSSSHE MLPDLGLGQM SQPPLSTQYS GVLELSQQSS RRQQQMELGH  360
TRGYDTSSQH IHWSL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G42200.1	6e-69	SBP family protein