PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pd.00g1007020.m01

Organism

Prunus domestica

Taxonomic ID

3758

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

TCP

Protein Properties

Length: 537aa MW: 57939.4 Da PI: 7.1742

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pd.00g1007020.m01	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	117.2	2e-36	115	279	2	134
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt............................ 65 g+kdrhsk+ T++g+RdRRvRls+++a++f+dLqd+LG+d++sk++eWL+++a ai el+++ Pd.00g1007020.m01 115 SGGKDRHSKVWTSKGLRDRRVRLSVTTAIQFYDLQDRLGYDQPSKAVEWLIKAAADAIAELPSLnnsfpdtpkqlsdekrascghgfdsaev 206 689***********************************************************8888877777766666666653332222 PP TCP 66 ...ssssasec.......eaesssssasnsssgkaaksaakskksqksaasalnlak....esrakarararertrekmrikn 134 + +++++++++ + + +++a+s++s++s+ s l+l++ r kar+rarer ++++ +++ Pd.00g1007020.m01 207 eleG------HghgdpnyHHHQNQNQGQ----HLSLSKSACSSNSETSKGSGLSLSQseirVNRVKARERARERAAKDKEKES 279 2220......022211112233333333....3444555555666666666666666423366699**9998777766654 PP

Sequence ? help Back to Top
Protein Sequence Length: 537 aa Download sequence
MGCTPIMPGS LFRSVSFGCS NLKAFDTCTK SKPTQHCSRA ERLHESTDME VEEIQAQACK 60 FPRIGNGSSR ATNPAADDED QDQSYLDLKR AATADAGNRL RGWHHSRIIR VSRASGGKDR 120 HSKVWTSKGL RDRRVRLSVT TAIQFYDLQD RLGYDQPSKA VEWLIKAAAD AIAELPSLNN 180 SFPDTPKQLS DEKRASCGHG FDSAEVELEG HGHGDPNYHH HQNQNQGQHL SLSKSACSSN 240 SETSKGSGLS LSQSEIRVNR VKARERARER AAKDKEKESN ESASHIAHHH QQNSSNLNNS 300 ISQSASFTEL LTGGIGTNSS NNNNSPTAAA HQQQNHGGEP ILFHKAAAAG GGGPMDYFSS 360 GLLGLSSSTR THHSSGFSSQ IQLGMNSIPQ TMSVVSPFSV SGDHHHNHNP ELQHFSFVPD 420 HLIPVTTSSQ PGNGGDYNLN FSISSSGGLA GFNRGTLQSN SSSSPSLLPH HLQRFSPIDG 480 SSNLGLIAAC NIPTATEAGI QTTREKQRTD LDHDQSLAAH LSFFLESEAK EAVATCE

Sequence ? help Back to Top

Protein Sequence Length: 537 aa Download sequence

MGCTPIMPGS LFRSVSFGCS NLKAFDTCTK SKPTQHCSRA ERLHESTDME VEEIQAQACK  60
FPRIGNGSSR ATNPAADDED QDQSYLDLKR AATADAGNRL RGWHHSRIIR VSRASGGKDR  120
HSKVWTSKGL RDRRVRLSVT TAIQFYDLQD RLGYDQPSKA VEWLIKAAAD AIAELPSLNN  180
SFPDTPKQLS DEKRASCGHG FDSAEVELEG HGHGDPNYHH HQNQNQGQHL SLSKSACSSN  240
SETSKGSGLS LSQSEIRVNR VKARERARER AAKDKEKESN ESASHIAHHH QQNSSNLNNS  300
ISQSASFTEL LTGGIGTNSS NNNNSPTAAA HQQQNHGGEP ILFHKAAAAG GGGPMDYFSS  360
GLLGLSSSTR THHSSGFSSQ IQLGMNSIPQ TMSVVSPFSV SGDHHHNHNP ELQHFSFVPD  420
HLIPVTTSSQ PGNGGDYNLN FSISSSGGLA GFNRGTLQSN SSSSPSLLPH HLQRFSPIDG  480
SSNLGLIAAC NIPTATEAGI QTTREKQRTD LDHDQSLAAH LSFFLESEAK EAVATCE

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G18390.1	7e-44	TCP family protein