PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pd.00g1006050.m01

Organism

Prunus domestica

Taxonomic ID

3758

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

MYB_related

Protein Properties

Length: 689aa MW: 76022.7 Da PI: 10.3687

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pd.00g1006050.m01	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	30.7	7.5e-10	28	74	2	41
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.......TTS-HHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmg.......kgRtlkqck 41 +W t+E++ll++avk++G ++W+++a +++ + t+++ck Pd.00g1006050.m01 28 SSWGTWEELLLACAVKRHGINDWDSVAMELQaktslphLLTTAYNCK 74 57*****************************8888888777888887 PP

Sequence ? help Back to Top
Protein Sequence Length: 689 aa Download sequence
MFSDLNAQPY FEHTCNLELQ DQTTTFTSSW GTWEELLLAC AVKRHGINDW DSVAMELQAK 60 TSLPHLLTTA YNCKLNIPWL DDLRKLRVAQ LRQELHRNDV SIVSLQLKVK RLEEEREDSS 120 KDDEAKPDLE EEDSKGHRSE NDKNIQDEPD RSKPDQENQS VNGSNSTCSK SLDNKPGRED 180 RVASEPEPHP VPDGSREPTK GTGGGGHSES ESDKGSSETV AKKRSREGKG GGDSAGEMRE 240 SSEAQSSASL TRKWNRKRRR RVEVPEQQRN NEELLLVKSQ PLVGVLQMIR AHEHSSLFER 300 RLPTQESDKY KSMVQQHVDL ETIQSKLHKD AYSSCALSFY RDLLLLFNNA VVFFPKSSLE 360 SLTAHQLRRL VLNEMKKNNL ITRPPPNPSP SSEPSDSLPA AAVHAPPPTT TPPCPPPTQP 420 PKRPDQLERS DSLLAKHKST APIIVCRKRS SISSKPSAAA SIFDVKPKGE QQQPKQQQQG 480 DEKKKAAAFD VKTPINNNKA SSKDDVAEEH KGGGAGAKAK DNPVTTGTRS SRRTHHENNK 540 KDASGSTKKQ TETPKADKKS KTEAAALDKK RSAAADFLKR IKRNAPAADT LKSGSGSGSG 600 TSTRSGGGEQ KRRGGGKVDK VKERVLRQSG GDKKKQAKEE SSSPSKRSVG RPPKKAAAET 660 ANVVASSKRP RENGGKQEAS RRPRKRSRR

Sequence ? help Back to Top

Protein Sequence Length: 689 aa Download sequence

MFSDLNAQPY FEHTCNLELQ DQTTTFTSSW GTWEELLLAC AVKRHGINDW DSVAMELQAK  60
TSLPHLLTTA YNCKLNIPWL DDLRKLRVAQ LRQELHRNDV SIVSLQLKVK RLEEEREDSS  120
KDDEAKPDLE EEDSKGHRSE NDKNIQDEPD RSKPDQENQS VNGSNSTCSK SLDNKPGRED  180
RVASEPEPHP VPDGSREPTK GTGGGGHSES ESDKGSSETV AKKRSREGKG GGDSAGEMRE  240
SSEAQSSASL TRKWNRKRRR RVEVPEQQRN NEELLLVKSQ PLVGVLQMIR AHEHSSLFER  300
RLPTQESDKY KSMVQQHVDL ETIQSKLHKD AYSSCALSFY RDLLLLFNNA VVFFPKSSLE  360
SLTAHQLRRL VLNEMKKNNL ITRPPPNPSP SSEPSDSLPA AAVHAPPPTT TPPCPPPTQP  420
PKRPDQLERS DSLLAKHKST APIIVCRKRS SISSKPSAAA SIFDVKPKGE QQQPKQQQQG  480
DEKKKAAAFD VKTPINNNKA SSKDDVAEEH KGGGAGAKAK DNPVTTGTRS SRRTHHENNK  540
KDASGSTKKQ TETPKADKKS KTEAAALDKK RSAAADFLKR IKRNAPAADT LKSGSGSGSG  600
TSTRSGGGEQ KRRGGGKVDK VKERVLRQSG GDKKKQAKEE SSSPSKRSVG RPPKKAAAET  660
ANVVASSKRP RENGGKQEAS RRPRKRSRR

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	256	260	RKRRR
2	257	262	KRRRRV
3	681	689	RRPRKRSRR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G44430.1	4e-70	MYB_related family protein