PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pd.00g1006020.m01
Organism
Prunus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family HB-other
Protein Properties Length: 243aa    MW: 26306.6 Da    PI: 4.9049
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pd.00g1006020.m01genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox23.87.5e-08194235243
                        T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHH CS
           Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterq 43 
                        rk+ +++keq   Lee F+++++++ +++  LAk+l+L  rq
  Pd.00g1006020.m01 194 RKKLRLSKEQSAFLEESFKEHHTLNPKQKLALAKQLNLRPRQ 235
                        778899********************************9987 PP
Sequence ? help Back to Top
Protein Sequence    Length: 243 aa     Download sequence    
MELCLSLGDV QAPAEPFGLV SSSSEKPRDD RVIMAASKTT GFCMSLSIGP SCDSSTSTSP  60
READQQLDRN DHQNDDDRSR FSAACGSKSD VPVQLDLLPH TPVAPRSSSH GFPWPTPSDQ  120
NENVNRVEEV AAVSSSPTNS GASSFQMDIG LYSSNYRGSG GKRSHSPDAE GDEGERQSNS  180
RASDEDDING INTRKKLRLS KEQSAFLEES FKEHHTLNPK QKLALAKQLN LRPRQDEAEA  240
NGG
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1193199TRKKLRL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06710.17e-18HD-ZIP family protein