PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pd.00g1004840.m01
Organism
Prunus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family GRAS
Protein Properties Length: 519aa    MW: 57997.6 Da    PI: 5.6072
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pd.00g1004840.m01genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS425.73.6e-1301505192374
               GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkf 93 
                        +++L++cA+a++++dl +a++l++ l +++s +g+p+qRl ay++e+L+arl rs+s++yk+l+++  +    +e +++++++++++P+ +f
  Pd.00g1004840.m01 150 KDVLIHCAHAIAEEDLPRANSLMEVLGQMVSVSGEPIQRLGAYMLEGLRARLERSGSSIYKTLKCEVPT---GAELMSYMSVLFQICPYWRF 238
                        789*****************************************************************9...9******************* PP

               GRAS  94 shltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlva 183
                        +++ aN  I ea+e+e r+HiiDf+i qG QW++L+q La +p+gpp++RiTgv++++s   +   l+ +g+rL+++A++ +vpfefn  +a
  Pd.00g1004840.m01 239 AYMSANVVIREALENEPRIHIIDFQIAQGSQWVPLIQDLARQPGGPPHIRITGVDDSQSAhaRGGGLHIVGQRLSQIANSWNVPFEFNN-AA 329
                        ********************************************************9988889999***********************.89 PP

               GRAS 184 krledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleakl 275
                         +  +++le+Lr++pgEa+aVn+ + lh+++desvs++++rd++L+lvkslsPkv+++veqe+++n+++F+ rf+e ++yy+a+f+s+++  
  Pd.00g1004840.m01 330 MSGCEVKLENLRIQPGEAIAVNFPYVLHHMPDESVSTQNHRDRLLRLVKSLSPKVMTLVEQESNTNTSPFFSRFVEMVDYYTAMFESIDVAR 421
                        999***************************************************************************************** PP

               GRAS 276 preseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpL 367
                        pr++++ri+ E ++++r+ivn+vacegaer+erhe l+kW++rl++ GF+p+pls k+++ +++ll++++++ yr++e +g+l+lgWk+r++
  Pd.00g1004840.m01 422 PRDDKQRISAEMHCVARDIVNMVACEGAERVERHELLGKWKSRLTMDGFTPYPLSPKVTEAIRSLLKEFNGN-YRLQEANGALYLGWKQRAM 512
                        **********************************************************************77.******************* PP

               GRAS 368 vsvSaWr 374
                        v+ SaWr
  Pd.00g1004840.m01 513 VTSSAWR 519
                        ******8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 519 aa     Download sequence    
MQDIDPSIFQ ILENSVCSDT GSQGNNVSFQ TYKEEYFTLE SSPATTGFVV CDSPSAVSGL  60
SNRSPFSSQG SQSCLSDQHH SPDNTSGSPI SGCSVADDGN GLRCKLRELE ISLLGPESDI  120
IVDSHYCCYK SDMPRWNRNE IPEMTNLNLK DVLIHCAHAI AEEDLPRANS LMEVLGQMVS  180
VSGEPIQRLG AYMLEGLRAR LERSGSSIYK TLKCEVPTGA ELMSYMSVLF QICPYWRFAY  240
MSANVVIREA LENEPRIHII DFQIAQGSQW VPLIQDLARQ PGGPPHIRIT GVDDSQSAHA  300
RGGGLHIVGQ RLSQIANSWN VPFEFNNAAM SGCEVKLENL RIQPGEAIAV NFPYVLHHMP  360
DESVSTQNHR DRLLRLVKSL SPKVMTLVEQ ESNTNTSPFF SRFVEMVDYY TAMFESIDVA  420
RPRDDKQRIS AEMHCVARDI VNMVACEGAE RVERHELLGK WKSRLTMDGF TPYPLSPKVT  480
EAIRSLLKEF NGNYRLQEAN GALYLGWKQR AMVTSSAWR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17230.10.0GRAS family protein