PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pd.00g1001630.m01

Organism

Prunus domestica

Taxonomic ID

3758

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

GATA

Protein Properties

Length: 536aa MW: 59394.9 Da PI: 7.2177

Description

GATA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pd.00g1001630.m01	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GATA	49.9	4.5e-16	7	41	1	35
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 C +Cg+t+TplWR+gp ++ LCnaCG ++r kg+ Pd.00g1001630.m01 7 CYHCGVTSTPLWRNGPPDKPVLCNACGSRWRTKGT 41 **************55555*********997 PP

Sequence ? help Back to Top
Protein Sequence Length: 536 aa Download sequence
MGKQGPCYHC GVTSTPLWRN GPPDKPVLCN ACGSRWRTKG TLANYTPLHA RAEPDDYEDH 60 RVSRVKSISI NKNKEIKLVK RKQNPDSVMV GGVAADYAHG FRKVTDEDTS NRSSSGSAVS 120 NSESCAQFGS ADASDLTGPA QSMVWDSMVP SRKRTCIGRP KPSPVEKLTK DLYTILHEQQ 180 SSYFSGSSEE DLLFECETPM VSVEIGHGSV LMRHPSSITR EEESEASSLS VDNKQCHINE 240 AYSHPATLLV HNNKGIIMTS SVTGKMNNLA GQGMQQEPLK RDKSQYDNFQ ILGNHNSPLC 300 HVDLNDILNF EEFTRQLTNE EQQQLLKHLP PVDVVKFPYS LKSMFDSPQF RENLTSLQQL 360 LAEGVFDISF LGAKTEDCKT LKRLVLSNSS KSKWVERYHL LKKSKTSPGK SVISGPNALA 420 SSNFRHVKRL RDSETQSFPD VKMMMKSPKR IIVKGSNENK DLLDYDGSCF SPRSLFALPA 480 DGSSLLMESM NFVDESSDQD LLLDLPSNGS FAQAELLHPA MSFGAQQNYI GTTPSA

Sequence ? help Back to Top

Protein Sequence Length: 536 aa Download sequence

MGKQGPCYHC GVTSTPLWRN GPPDKPVLCN ACGSRWRTKG TLANYTPLHA RAEPDDYEDH  60
RVSRVKSISI NKNKEIKLVK RKQNPDSVMV GGVAADYAHG FRKVTDEDTS NRSSSGSAVS  120
NSESCAQFGS ADASDLTGPA QSMVWDSMVP SRKRTCIGRP KPSPVEKLTK DLYTILHEQQ  180
SSYFSGSSEE DLLFECETPM VSVEIGHGSV LMRHPSSITR EEESEASSLS VDNKQCHINE  240
AYSHPATLLV HNNKGIIMTS SVTGKMNNLA GQGMQQEPLK RDKSQYDNFQ ILGNHNSPLC  300
HVDLNDILNF EEFTRQLTNE EQQQLLKHLP PVDVVKFPYS LKSMFDSPQF RENLTSLQQL  360
LAEGVFDISF LGAKTEDCKT LKRLVLSNSS KSKWVERYHL LKKSKTSPGK SVISGPNALA  420
SSNFRHVKRL RDSETQSFPD VKMMMKSPKR IIVKGSNENK DLLDYDGSCF SPRSLFALPA  480
DGSSLLMESM NFVDESSDQD LLLDLPSNGS FAQAELLHPA MSFGAQQNYI GTTPSA

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G17570.3	1e-152	GATA family protein