PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pd.00g096720.m01
Organism
Prunus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family C2H2
Protein Properties Length: 265aa    MW: 29489.3 Da    PI: 7.5424
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pd.00g096720.m01genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.30.0001285107123
                       EEETTTTEEESSHHHHHHHHHHT CS
           zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                       ++C++C k F+++  L  H++ H
  Pd.00g096720.m01  85 FECQYCFKEFTNSQALGGHQNAH 107
                       89******************988 PP
Sequence ? help Back to Top
Protein Sequence    Length: 265 aa     Download sequence    
MEKGHDQDLD QSHAYSAGSC VEKKLRLFGF ELSPSKNEDS SIKGSAEGDE SVNSSNSISY  60
GREVHMNKPA SNEKSSTSEA DDKKFECQYC FKEFTNSQAL GGHQNAHKKE RMKKKRLQLQ  120
ARKASINFYL QPFQTNNLGN GLAFQRGSSP SSWFYDPSSY VVNPDQFTLH EEAQISFNPF  180
DQNGSSGSQV SNWYALPPQF SSQTDEQDAS NNKFTLTQTD RSGESRPVVF KPSPLSASTQ  240
SCKPLDLQLG LGLPSKIRRS SRSEV
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06650.16e-17C2H2 family protein