PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pd.00g086270.m01

Organism

Prunus domestica

Taxonomic ID

3758

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

SBP

Protein Properties

Length: 954aa MW: 105879 Da PI: 6.3607

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pd.00g086270.m01	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	131	4.3e-41	142	219	1	78
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 +Cqve+C+adls+ak+yhrrhkvC++hska+++lv + +qrfCqqCsrfh l+efDe+krsCrrrLa+hn+rrrk+++ Pd.00g086270.m01 142 VCQVEDCKADLSNAKDYHRRHKVCDMHSKASTALVGNAMQRFCQQCSRFHVLQEFDEGKRSCRRRLAGHNRRRRKTHP 219 6**************************************************************************976 PP

Sequence ? help Back to Top
Protein Sequence Length: 954 aa Download sequence
MEAEFGGKAH SYYGMKAVGK KSFEWDLNDW KWDGDLFTAS PLNSVPSACR SKQLFPVRPE 60 TPSNAGLSNS SSSGLDNISP GNEKGKRELE KRRRGVFVEN EVHDEAGSLN LNLGGQAYPI 120 MEGEVQTGKK TKIVGTTSNR AVCQVEDCKA DLSNAKDYHR RHKVCDMHSK ASTALVGNAM 180 QRFCQQCSRF HVLQEFDEGK RSCRRRLAGH NRRRRKTHPD TTANGGSLND ERGSSYLLIS 240 LLSILSNMHS TSSDQTKDQD LLSHLLRSLA NLAGTADGRN ISTLLQGSQG LFNSGTSVQI 300 TKVPDMDDGV NLEDLRPVGQ CSVVPASDML ERRISSVDDP GSLQVLSGLQ ATEPLPSRDS 360 SESKSVTPEA TSRRFQLNGI DLNNTYDDSQ DYLENLGNSH VPASPGTASL GFSSWMQRDS 420 HKSSPPQTSG NSDLTSTQSP SSSSGEAQSR TDRIVFKLFG KDPNDLPFIL RSQILDWLSH 480 SPTDIESYIR PGCIILTIYL RLEKSTWEEL CCHLGSSLKT LLDAADDPFW RTGWVYTRSL 540 YLRGLSLWLL CALEGKYLVQ ETCYDMMDGV HTTVEHDELQ CLKFSCSIPD VTGRGFIEVE 600 DHGLSSSFFP FIVAEQEVCS EICMLEGEIE VAESADAEKL EAKNQALDFI HELGWLLHRS 660 RAKFRLGHSD PNLDLFPFSR FRLLMEFSIE HDWCVVVKKL LGILFEGTVD AGEHTSVEFA 720 LLDMSLLHRA VRRNCRSMVE FLLKFIPNQG LTGSEQKQQV DRDGNSFLFK PDAVGPMGLT 780 PLHVAASADG YEHVLDALTD DPGKLGIEAW KNARDSTGLT PYDYACLQSR YSYVHLVQRK 840 ISKTLESGQV VLDIPGVILD GNGKQKQSEA YKPSRVASLE TEKIEMKAIL RHCKLCAQKP 900 AYGNTRSLVY RPAMLSMVAV AAVCVCVALL FKSTPEVLFV FQPFRWELLK FGSS

Sequence ? help Back to Top

Protein Sequence Length: 954 aa Download sequence

MEAEFGGKAH SYYGMKAVGK KSFEWDLNDW KWDGDLFTAS PLNSVPSACR SKQLFPVRPE  60
TPSNAGLSNS SSSGLDNISP GNEKGKRELE KRRRGVFVEN EVHDEAGSLN LNLGGQAYPI  120
MEGEVQTGKK TKIVGTTSNR AVCQVEDCKA DLSNAKDYHR RHKVCDMHSK ASTALVGNAM  180
QRFCQQCSRF HVLQEFDEGK RSCRRRLAGH NRRRRKTHPD TTANGGSLND ERGSSYLLIS  240
LLSILSNMHS TSSDQTKDQD LLSHLLRSLA NLAGTADGRN ISTLLQGSQG LFNSGTSVQI  300
TKVPDMDDGV NLEDLRPVGQ CSVVPASDML ERRISSVDDP GSLQVLSGLQ ATEPLPSRDS  360
SESKSVTPEA TSRRFQLNGI DLNNTYDDSQ DYLENLGNSH VPASPGTASL GFSSWMQRDS  420
HKSSPPQTSG NSDLTSTQSP SSSSGEAQSR TDRIVFKLFG KDPNDLPFIL RSQILDWLSH  480
SPTDIESYIR PGCIILTIYL RLEKSTWEEL CCHLGSSLKT LLDAADDPFW RTGWVYTRSL  540
YLRGLSLWLL CALEGKYLVQ ETCYDMMDGV HTTVEHDELQ CLKFSCSIPD VTGRGFIEVE  600
DHGLSSSFFP FIVAEQEVCS EICMLEGEIE VAESADAEKL EAKNQALDFI HELGWLLHRS  660
RAKFRLGHSD PNLDLFPFSR FRLLMEFSIE HDWCVVVKKL LGILFEGTVD AGEHTSVEFA  720
LLDMSLLHRA VRRNCRSMVE FLLKFIPNQG LTGSEQKQQV DRDGNSFLFK PDAVGPMGLT  780
PLHVAASADG YEHVLDALTD DPGKLGIEAW KNARDSTGLT PYDYACLQSR YSYVHLVQRK  840
ISKTLESGQV VLDIPGVILD GNGKQKQSEA YKPSRVASLE TEKIEMKAIL RHCKLCAQKP  900
AYGNTRSLVY RPAMLSMVAV AAVCVCVALL FKSTPEVLFV FQPFRWELLK FGSS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	91	132	KRRRGVFVENEVHDEAGSLNLNLGGQAYPIMEGEVQTGKKTK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G60030.1	0.0	SBP family protein