PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pd.00g084870.m01

Organism

Prunus domestica

Taxonomic ID

3758

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

MYB

Protein Properties

Length: 479aa MW: 54534.7 Da PI: 6.564

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pd.00g084870.m01	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	58.4	1.6e-18	209	255	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g WT eEd ll+++v+q+G + W+ Ia++++ gR +kqc++rw+++l Pd.00g084870.m01 209 KGQWTIEEDRLLIQLVEQYGVRKWSHIAQMLP-GRIGKQCRERWHNHL 255 799***************************.***********97 PP
2	Myb_DNA-binding	54.4	2.9e-17	261	303	1	45
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 ++ W++ Ed++l++a+++ G++ W+ Ia++++ gRt++++k++w+ Pd.00g084870.m01 261 KDTWSEAEDKILIQAHAEIGNK-WAEIAKRLP-GRTENSIKNHWN 303 679*****************.*****.*********8 PP

Sequence ? help Back to Top
Protein Sequence Length: 479 aa Download sequence
MELNKLRENL ASQVPLVVPD NYMMKLYNMK DEFPFEASSS SSKGNYNYLQ DFHHLDHQFQ 60 VNGSSSNPMF GVQNPCFDPY NDTTYTYEAS TTDVKFYECK PHNAETNMGH GQVLDNFQSG 120 SGYLNFPTHT SNPLDHLMGS SHRSATNFLP LDYQDIKPMN FVVPDEVSCI NNTDQNGYYK 180 KFGMNGKSRV STLTRGSTYK GRKKSNVVKG QWTIEEDRLL IQLVEQYGVR KWSHIAQMLP 240 GRIGKQCRER WHNHLRPDIK KDTWSEAEDK ILIQAHAEIG NKWAEIAKRL PGRTENSIKN 300 HWNATKRRQY SKRKCRSKYP RGSLLQEYIK SLNLDSTGSS TGRQRKNKSG NNNATSPNNM 360 ASSSTKSHTQ QTQNNVGFSC ANDRLVPNHD FNEDPDFCFD DNMFQEGCSI DSLLDDIPCA 420 LVLGENNGDF DGKIMAQASV VADEEKDFEM EMQVDVGPVM ESSEVKKELD LVEMISQVN

Sequence ? help Back to Top

Protein Sequence Length: 479 aa Download sequence

MELNKLRENL ASQVPLVVPD NYMMKLYNMK DEFPFEASSS SSKGNYNYLQ DFHHLDHQFQ  60
VNGSSSNPMF GVQNPCFDPY NDTTYTYEAS TTDVKFYECK PHNAETNMGH GQVLDNFQSG  120
SGYLNFPTHT SNPLDHLMGS SHRSATNFLP LDYQDIKPMN FVVPDEVSCI NNTDQNGYYK  180
KFGMNGKSRV STLTRGSTYK GRKKSNVVKG QWTIEEDRLL IQLVEQYGVR KWSHIAQMLP  240
GRIGKQCRER WHNHLRPDIK KDTWSEAEDK ILIQAHAEIG NKWAEIAKRL PGRTENSIKN  300
HWNATKRRQY SKRKCRSKYP RGSLLQEYIK SLNLDSTGSS TGRQRKNKSG NNNATSPNNM  360
ASSSTKSHTQ QTQNNVGFSC ANDRLVPNHD FNEDPDFCFD DNMFQEGCSI DSLLDDIPCA  420
LVLGENNGDF DGKIMAQASV VADEEKDFEM EMQVDVGPVM ESSEVKKELD LVEMISQVN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G18770.1	1e-107	MYB family protein