PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pd.00g084360.m01

Organism

Prunus domestica

Taxonomic ID

3758

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

LBD

Protein Properties

Length: 201aa MW: 22069.8 Da PI: 8.1368

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pd.00g084360.m01	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	144.1	4.1e-45	11	109	1	99
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkae 93 +CaaCk+lrrkC ++C++apyfp e+p+kfanvhk+FGasnv+kll++l +++reda++sl+yeAear+rdPvyG+vg i+ lq+q+++l++e Pd.00g084360.m01 11 PCAACKFLRRKCMPGCIFAPYFPPEEPQKFANVHKIFGASNVTKLLNELLPHQREDAVNSLAYEAEARVRDPVYGCVGAISFLQRQVQRLQKE 103 7******************************************************************************************** PP DUF260 94 lallke 99 l+++++ Pd.00g084360.m01 104 LDSANA 109 *99876 PP

Sequence ? help Back to Top
Protein Sequence Length: 201 aa Download sequence
MASSSSSYNS PCAACKFLRR KCMPGCIFAP YFPPEEPQKF ANVHKIFGAS NVTKLLNELL 60 PHQREDAVNS LAYEAEARVR DPVYGCVGAI SFLQRQVQRL QKELDSANAD LIRYACNEIT 120 TATVLPPPVS LPTGLNSVIQ PNMAPRRRSV DHHPHHQFYQ QINNTSTTGG AFSAPYLPWN 180 DIHNRSGDIN EGGGGGGDGR M

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G63090.2	4e-78	LBD family protein