PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pd.00g080820.m01 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
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Family | bHLH | ||||||||
Protein Properties | Length: 406aa MW: 45204.5 Da PI: 7.8308 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 39.5 | 1e-12 | 299 | 344 | 4 | 54 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 +h e+Er+RR+++N++f Lr+++P+ K++Ka+ L Av YI++L Pd.00g080820.m01 299 NHVEAERQRREKLNHRFYALRSVVPNV-----SKMDKASLLSDAVVYINKL 344 799***********************6.....5***************998 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 406 aa Download sequence |
MSSCSPNFGQ ENSATLQQRL QFIVQNRPEW WVYSIFWQAS KDSNGQVALS WAGGHFRSSR 60 DLASKRSNRL VHNYQPKSGF ISSERKKVVN REVEALFHED MDLDGGDVTD SEWFYFYTVS 120 LTQSFGACHG TGNILGRAFC SGGFVWLAGD HELQFYECER VKEARMHGIQ TLVCIQTSCG 180 VLELASLDVI KEDWGLVEVS KSLFGSENSR VSKPQSSREG HVLVPLLESG MFSAGPQKEW 240 TAQGGTKERF ALNIGGSSSD SGPSDSVGNF TTENAENNGR LKKRGRSSNH GTDKESPINH 300 VEAERQRREK LNHRFYALRS VVPNVSKMDK ASLLSDAVVY INKLKARVEE LEAKIQQQPQ 360 KPKLARPRPA SSYTNSEVAG AIEVDVKIVG SEAMIRVQSP DQNYPC |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 281 | 287 | LKKRGRS |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G00870.1 | 7e-52 | bHLH family protein |