PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pd.00g068170.m01

Organism

Prunus domestica

Taxonomic ID

3758

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

C2H2

Protein Properties

Length: 1161aa MW: 130243 Da PI: 7.0388

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pd.00g068170.m01	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	15.9	3.7e-05	921	943	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k F r nL+ H r H Pd.00g068170.m01 921 FVCEICNKGFQRDQNLQLHRRGH 943 89******************988 PP
2	zf-C2H2	14.3	0.00012	997	1019	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC +C+k + +s+ k H++t+ Pd.00g068170.m01 997 WKCDKCSKKYAVQSDWKAHQKTC 1019 58*******************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 1161 aa Download sequence
MESVEDEYVE QVVSPRSCSP VNHFEDPQVL PRIGNEYQAE IPPLIAHFDY LKITNKPADS 60 KAQLDLSNYF SLGLPIPWRN CEVKKCNGKL ESGGVEQSRI SLNNENSELK VKHLNPVLED 120 AKNVEEFSNL APTVGRGLVL PLESNMKSWS KLEEDSFLLC LYIFGKNLRL VKRFIGSKEM 180 GDILSFYYGT FYTSDGYRRW SECRKLKSRR CTHGKKIFTG WRQKELVSRL IPHVSKECQD 240 MLMESSRYFV EGKISFEEYI FKLKDTVGIH MLIEAVGVGK GKQDLTGTAL EPIKNNHVIS 300 FRPEVPIGKA CSSLTASEII KFLTGNFRLS KARMNDLFWE AVWPRLLARG WHSEQPKLSL 360 VFLVPGIEKF SRSLVKGNQY FDSVSDVLKN VASNPGILKL DNEPPKGSES EDRKDRWDLP 420 KSQGPNDLSN KQHHHYLLPR SVNGGRDLRK FTIVDTSMLL VAEKPKVREL RSLHVQTAGQ 480 STLYYLSSEN EQDTSKESED YAEETNTSNP EEDMIDREAF VNSSYCVTSN VNTGMPNTPD 540 PALVAMENHE SQITSLLNHE SQSTSLLNDK CSGKIVKDKF SQKLTSGRLK YLAAIMKQKD 600 LTDCKHGESS CSSGEIISVD RKPIQDESHA LSNLPNACEV MEYQVDPQHF STASSLEKGS 660 PSGSNEGSVT TNCLDREGSP EKSQPWTLID LNLPPVSPDL GTDEPLIKCM MQNNDNSSEN 720 KSSSLSETSE QPEPLKLPEV GESMEQQQPA VKSQRQSTRN RPLTTRAWEA LELDFCRTKR 780 KRKGETLQNM STSRLQRDQG NTSVSSVFDE LQDIGEKRVK SLQQSDNANA VGVPQEQIGM 840 LTCRNWLDWN SRVCLNGDVE EGSFSSGNNT GELEVHQENQ QQNQLQGSGS GGASGAQSNS 900 NDPSAEVIAL SPTTLMATNR FVCEICNKGF QRDQNLQLHR RGHNLPWKLR QRTTTEIRKR 960 VYICPEPTCV HHNPARALGD LTGIKKHFSR KHGEKKWKCD KCSKKYAVQS DWKAHQKTCG 1020 TREYKCDCGT IFSRRDSFIT HRAFCDALAE ENNKVNHGLM SSQTQMPLPH DQLISSMAMN 1080 TNSSMGGGSD VLNYDISNKN SLNKSFPDDL VPMQFKSMNM NIMAGGVGGP GMFSSTSESS 1140 SNGCHCKQLY HQLPHDAEKL C

Sequence ? help Back to Top

Protein Sequence Length: 1161 aa Download sequence

MESVEDEYVE QVVSPRSCSP VNHFEDPQVL PRIGNEYQAE IPPLIAHFDY LKITNKPADS  60
KAQLDLSNYF SLGLPIPWRN CEVKKCNGKL ESGGVEQSRI SLNNENSELK VKHLNPVLED  120
AKNVEEFSNL APTVGRGLVL PLESNMKSWS KLEEDSFLLC LYIFGKNLRL VKRFIGSKEM  180
GDILSFYYGT FYTSDGYRRW SECRKLKSRR CTHGKKIFTG WRQKELVSRL IPHVSKECQD  240
MLMESSRYFV EGKISFEEYI FKLKDTVGIH MLIEAVGVGK GKQDLTGTAL EPIKNNHVIS  300
FRPEVPIGKA CSSLTASEII KFLTGNFRLS KARMNDLFWE AVWPRLLARG WHSEQPKLSL  360
VFLVPGIEKF SRSLVKGNQY FDSVSDVLKN VASNPGILKL DNEPPKGSES EDRKDRWDLP  420
KSQGPNDLSN KQHHHYLLPR SVNGGRDLRK FTIVDTSMLL VAEKPKVREL RSLHVQTAGQ  480
STLYYLSSEN EQDTSKESED YAEETNTSNP EEDMIDREAF VNSSYCVTSN VNTGMPNTPD  540
PALVAMENHE SQITSLLNHE SQSTSLLNDK CSGKIVKDKF SQKLTSGRLK YLAAIMKQKD  600
LTDCKHGESS CSSGEIISVD RKPIQDESHA LSNLPNACEV MEYQVDPQHF STASSLEKGS  660
PSGSNEGSVT TNCLDREGSP EKSQPWTLID LNLPPVSPDL GTDEPLIKCM MQNNDNSSEN  720
KSSSLSETSE QPEPLKLPEV GESMEQQQPA VKSQRQSTRN RPLTTRAWEA LELDFCRTKR  780
KRKGETLQNM STSRLQRDQG NTSVSSVFDE LQDIGEKRVK SLQQSDNANA VGVPQEQIGM  840
LTCRNWLDWN SRVCLNGDVE EGSFSSGNNT GELEVHQENQ QQNQLQGSGS GGASGAQSNS  900
NDPSAEVIAL SPTTLMATNR FVCEICNKGF QRDQNLQLHR RGHNLPWKLR QRTTTEIRKR  960
VYICPEPTCV HHNPARALGD LTGIKKHFSR KHGEKKWKCD KCSKKYAVQS DWKAHQKTCG  1020
TREYKCDCGT IFSRRDSFIT HRAFCDALAE ENNKVNHGLM SSQTQMPLPH DQLISSMAMN  1080
TNSSMGGGSD VLNYDISNKN SLNKSFPDDL VPMQFKSMNM NIMAGGVGGP GMFSSTSESS  1140
SNGCHCKQLY HQLPHDAEKL C

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G44160.1	3e-85	C2H2 family protein