PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pd.00g057920.m01 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
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Family | LBD | ||||||||
Protein Properties | Length: 204aa MW: 22976.8 Da PI: 4.8748 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 92.9 | 3.7e-29 | 10 | 110 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlka 92 +C aCk+l+++C+++C++apyf +e+ +f +h +FGa++++++l+ lp +er a ++++eA+ ra dP+yGa++ il+lq+q+ + +a Pd.00g057920.m01 10 PCGACKFLKKRCKRGCIFAPYFMHEEaITDFSSIHNVFGANKMSRILSMLPMSERAVASWTMTFEAHDRAVDPIYGATSYILDLQEQVLNIQA 102 7*********************999856***************************************************************** PP DUF260 93 elallkee 100 +l+++ e+ Pd.00g057920.m01 103 QLDEAYEQ 110 **988766 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 204 aa Download sequence |
MSSRTRTFNP CGACKFLKKR CKRGCIFAPY FMHEEAITDF SSIHNVFGAN KMSRILSMLP 60 MSERAVASWT MTFEAHDRAV DPIYGATSYI LDLQEQVLNI QAQLDEAYEQ LACAIAPVAD 120 PNQDLENSIE QSEVANPTEQ AAVAKPTEFE SLPQFSFTHT NNVYNENMNL NYHVSGSYKN 180 TVNIPTENVA DGWVNNEVKV YARM |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G58190.1 | 2e-39 | LBD family protein |