PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pd.00g057910.m01 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
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Family | LBD | ||||||||
Protein Properties | Length: 222aa MW: 25077.8 Da PI: 4.3388 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 96.9 | 2.1e-30 | 8 | 105 | 1 | 97 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlka 92 +C aCk+l+++C+++C++apyf +e+ +f +h +FGa++++++l+ lp +er a ++++eA+ara dP yG+v+ il+lq+ql+++++ Pd.00g057910.m01 8 PCGACKFLKQRCKRGCIFAPYFMHEEaITDFSSIHNVFGARKMSRILSMLPMSERAVASWTMTFEAHARAVDPTYGCVSYILDLQEQLDEAHE 100 7*********************999856***************************************************************** PP DUF260 93 elall 97 +la++ Pd.00g057910.m01 101 QLARA 105 *9987 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 222 aa Download sequence |
MSSRTFNPCG ACKFLKQRCK RGCIFAPYFM HEEAITDFSS IHNVFGARKM SRILSMLPMS 60 ERAVASWTMT FEAHARAVDP TYGCVSYILD LQEQLDEAHE QLARAVAPVA NPNQDLENSN 120 EQSEVANPTE QAAVAKPTEF ESLPQFSFTH TNNVDNENMN LNYHVSGSYK NTVNIPTENV 180 ADGWVNNEGT SSMSFFDMEW SFEDVDELLV DPWFSTYISN IN |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G58190.1 | 1e-36 | LBD family protein |