PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pd.00g049400.m01
Organism
Prunus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family bHLH
Protein Properties Length: 312aa    MW: 35371.2 Da    PI: 4.8783
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pd.00g049400.m01genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH20.49.5e-07192236655
                       HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
               HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                       +++ r RR++i ++ +eL +l+P        K++ ae+L+ A +++k+L+
  Pd.00g049400.m01 192 SIAARERRRKITEKTQELGKLVPGG-----SKMNTAEMLTAAYNFVKYLR 236
                       67889******************95.....5*****************95 PP
Sequence ? help Back to Top
Protein Sequence    Length: 312 aa     Download sequence    
MALSSFSSRE TVPPQSFGSE MTNCVQPNIE AELLAAEELL KYYQVDYNCS ILPNNLFFDD  60
HPCHDPYNLL NLENCHPDTT SDDHLLLPHL TTPDMFPQLD FYPYPYPKRQ KCFQDFVYPE  120
FTPATFYDAF APDSCPLPEL LPAPGVFATP LLTFNQHPEE TVTDSNKLKV NDYEIGFTAK  180
KKVEEKCVSA QSIAARERRR KITEKTQELG KLVPGGSKMN TAEMLTAAYN FVKYLRAQVG  240
ILEFMGSFQE LKGAPPAEEL RAVAFPIIQE KLYLENNCLV PEKFVEILAK HFDAQSKPSL  300
SNNLHQLLTS SR
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1180201KKKVEEKCVSAQSIAARERRRK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30670.13e-26bHLH family protein