PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pd.00g045280.m01

Organism

Prunus domestica

Taxonomic ID

3758

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

C2H2

Protein Properties

Length: 437aa MW: 46966 Da PI: 9.6051

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pd.00g045280.m01	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	15.4	5.3e-05	197	219	2	23
EETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 2 kCpdCgksFsrksnLkrHirt.H 23 +C+ Cg+ F+ ++L++H+ H Pd.00g045280.m01 197 VCSQCGEIFPKMDSLEHHQAIrH 219 8******************9877 PP

Sequence ? help Back to Top
Protein Sequence Length: 437 aa Download sequence
MALLTFVPEA TEPKNKKKAP PPSKHRQKQS SSSKKQQNPP SSSSSSWDQI KNLLTCKQIE 60 GSRVHDPSKN HNIVNGGAGA AAAGYSKLGS SCSSICSFRD VVHGNTRVVH RADNSPESSS 120 LGQETGLLGR KHVTRSSTRS SSSRSNATGT GAAYNTTSAS SSSSSRGMQF RKLSGCYECH 180 MIVDPSRYPI PRSSVCVCSQ CGEIFPKMDS LEHHQAIRHA VSELGVEDSG RNIVEIIFKS 240 SWQKKDIPIC KIERILKVHN TQRTIQRFED CRDVVKNRAL GTTRKNPRCA ADGNELLRFH 300 CASISCTLGA RGSSSLCGSV PGCGVCTIIR HGFQGKTGGE GSKGVRTTAS SGRAHDSLSC 360 TDGRRAMLVC RVIAGRVRRI ADDAPTEEDA LSSLSAPGSY DSVAGFAGIY SNLEELVVYN 420 PRAILPCFVV IYKALES

Sequence ? help Back to Top

Protein Sequence Length: 437 aa Download sequence

MALLTFVPEA TEPKNKKKAP PPSKHRQKQS SSSKKQQNPP SSSSSSWDQI KNLLTCKQIE  60
GSRVHDPSKN HNIVNGGAGA AAAGYSKLGS SCSSICSFRD VVHGNTRVVH RADNSPESSS  120
LGQETGLLGR KHVTRSSTRS SSSRSNATGT GAAYNTTSAS SSSSSRGMQF RKLSGCYECH  180
MIVDPSRYPI PRSSVCVCSQ CGEIFPKMDS LEHHQAIRHA VSELGVEDSG RNIVEIIFKS  240
SWQKKDIPIC KIERILKVHN TQRTIQRFED CRDVVKNRAL GTTRKNPRCA ADGNELLRFH  300
CASISCTLGA RGSSSLCGSV PGCGVCTIIR HGFQGKTGGE GSKGVRTTAS SGRAHDSLSC  360
TDGRRAMLVC RVIAGRVRRI ADDAPTEEDA LSSLSAPGSY DSVAGFAGIY SNLEELVVYN  420
PRAILPCFVV IYKALES

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G75710.1	1e-165	C2H2 family protein