PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pd.00g041910.m01 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
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Family | LBD | ||||||||
Protein Properties | Length: 222aa MW: 24579.7 Da PI: 6.4943 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 107.1 | 1.4e-33 | 7 | 118 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeer...........edamsslvyeAearardPvyGavgvil 81 +C aCk+lrrkC ++C++apyf++eq + +fa++hk+FGasnv+kll++l +++ +a+ ++ yeA+ar++dP+yG+v++i+ Pd.00g041910.m01 7 PCGACKFLRRKCIRGCIFAPYFCHEQgATHFAAIHKVFGASNVSKLLAQLLSSKKkllaqlpvsdrCRAALTISYEAQARVQDPIYGCVSHIF 99 7*************************89*******************999665555777777777799999********************** PP DUF260 82 klqqqleqlkaelallkee 100 +lqqq+ +l+a+la++ke+ Pd.00g041910.m01 100 ALQQQVISLQAQLASVKEQ 118 ***************9987 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 222 aa Download sequence |
MTGSGSPCGA CKFLRRKCIR GCIFAPYFCH EQGATHFAAI HKVFGASNVS KLLAQLLSSK 60 KKLLAQLPVS DRCRAALTIS YEAQARVQDP IYGCVSHIFA LQQQVISLQA QLASVKEQAA 120 KGFSNANPIE KYDTNVQSWP QSESSNILMP QSMNLNNIND SMLPFYSENK NSNSFEGDRN 180 FMIPEVLNDM YGSYGDGEAS NSMSSLDMQM SNMQWGFDQD QD |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G58190.1 | 1e-56 | LBD family protein |