PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pd.00g039060.m01 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
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Family | ERF | ||||||||
Protein Properties | Length: 273aa MW: 29580.1 Da PI: 4.7521 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 60.9 | 3e-19 | 40 | 89 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 ++ GVr+++ +gr++AeIrdps+ + r++lg+f+taeeAa a+++a+++++g Pd.00g039060.m01 40 RFLGVRRRP-WGRYAAEIRDPST---KERHWLGTFDTAEEAALAYDRAARSMRG 89 678******.**********965...5*************************98 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 273 aa Download sequence |
MDFFNNSSKA NTSPSSSSKT KRKQQNQQTQ QPQQQQQETR FLGVRRRPWG RYAAEIRDPS 60 TKERHWLGTF DTAEEAALAY DRAARSMRGS KARTNFVYSD MPHGSSVTSI ISPDESQHDM 120 SAFFATPLQP QPQTTNHQQS FFTQDPFDAY PYSGGSSGGF GSGSYGPVSG GDEPGSGSGS 180 GSQSHTELPP LPPCVSSTCY GPDGVMGSDM DMSYFGFSEP PTNNGLDPMM SGSYMGFDSN 240 EFVQHSPLFG SMPPVSDAGI DGFDLGSSSA YFY |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G28160.1 | 3e-34 | ERF family protein |