PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pd.00g038420.m01 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
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Family | CO-like | ||||||||
Protein Properties | Length: 637aa MW: 70079.9 Da PI: 5.9516 | ||||||||
Description | CO-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-B_box | 20.9 | 7.5e-07 | 12 | 51 | 4 | 37 |
zf-B_box 4 rkCpeHeekelqlfCedCqqllCedClleeHkg......H 37 C+ + ++++ l+C+ ++ lC C ++ H+ H Pd.00g038420.m01 12 VPCDFCTDQPAVLYCKADSAKLCLFCDQHVHSAnllsrkH 51 57***************************99555555556 PP | |||||||
2 | zf-B_box | 21.9 | 3.7e-07 | 54 | 99 | 3 | 42 |
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42 ++C+++ +++++ C +++ lC++C H + H+++pl Pd.00g038420.m01 54 SQICDNCASEPVSVRCSTDNLVLCHECDWDAHGScsvsaaHDRTPL 99 689*************************999954888888888775 PP | |||||||
3 | CCT | 64.3 | 3.7e-22 | 406 | 449 | 1 | 44 |
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 R +a+lRYkeK+ktR+++K+irYesRKa+A++R+RvKGrFvk++ Pd.00g038420.m01 406 RGNAMLRYKEKKKTRRYDKHIRYESRKARADTRKRVKGRFVKAT 449 7789**************************************87 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 637 aa Download sequence |
MASPKSRSGE GVPCDFCTDQ PAVLYCKADS AKLCLFCDQH VHSANLLSRK HVRSQICDNC 60 ASEPVSVRCS TDNLVLCHEC DWDAHGSCSV SAAHDRTPLD GFSGCPSALQ LASLLGLDLH 120 DKNVPGRPDP QLQNWDMGMP SLDSSWSGMG LQDLMVPNHN QNGVVYPNDE LMVKRQSGGA 180 ISGKQKQGIQ KQLEDNGNEN MEGLEPLDLG NRNGGVDGVV VSAATSQPLL QQQAPFTSLL 240 MMPEENRGIV DGDMLWNSNP HGQSSQIWDF HLGRSRDHEE SGPLEVTYGS NDSGFMIKNF 300 GELMKETSLT DTKMFRDMYQ MNCPVGHDDI KFNNNSNNPA PSQGPATSES NNIPVGRPSL 360 GSAFGEDKGS GASTDLNFME QSFLMRGDSL RTVGTKADME LLAQNRGNAM LRYKEKKKTR 420 RYDKHIRYES RKARADTRKR VKGRFVKATE APDELIDFFF CVMGCRVLLG FLLAAAAVIA 480 SVDCNSEGDI LNAWKTQLTD PNNVLQSWDP TLINPCTYFH VTCNSENSVT RLDLGNANLS 540 GRLIPELGNL TNLQYLRVFS NSLIGHIPPN FGNLTSLEIL ELNSNRLTGP LPFVVLELVR 600 FGQLKHLDVS DNLLAGTVHR TNSTRFRVTT IIQDPQA |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G28050.1 | 1e-102 | CO-like family protein |