PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pd.00g038080.m01

Organism

Prunus domestica

Taxonomic ID

3758

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

SBP

Protein Properties

Length: 314aa MW: 34327.6 Da PI: 9.2235

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pd.00g038080.m01	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	131.5	2.9e-41	41	117	2	78
-SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 C v+gC++dlse+++yhrrhkvCe hsk+++v+++g+eqrfCqqCsrfh+l+efDe+krsCrrrL++hn+rrrk+q Pd.00g038080.m01 41 CLVDGCNSDLSECRDYHRRHKVCELHSKTSKVTIKGQEQRFCQQCSRFHSLEEFDEGKRSCRRRLDGHNKRRRKPQL 117 **************************************************************************985 PP

Sequence ? help Back to Top
Protein Sequence Length: 314 aa Download sequence
MENGSKGKLK DPGVSMMKSS SSAASLKRPR RTNNGAQIAS CLVDGCNSDL SECRDYHRRH 60 KVCELHSKTS KVTIKGQEQR FCQQCSRFHS LEEFDEGKRS CRRRLDGHNK RRRKPQLEPM 120 STNLGRFLSS YQGTRFLQFG SPQVCPTNAV MNSAWGGAIK AENDVLLHNH SQLSETRNLF 180 PGSLSCQQSI ESMLSQATAC QQLVGTNFAL GNSGNSHKMF ANGLYCDVES NRALSLLSST 240 PASRGEIGLS HAGQSSSIWP AQPLIPRLRY NVLGMEDNAA ISNLVADGSS NANNMPLQGM 300 FQIIYDGSTA GAPH

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	98	115	KRSCRRRLDGHNKRRRKP

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G50670.1	7e-53	SBP family protein