PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pd.00g038050.m01

Organism

Prunus domestica

Taxonomic ID

3758

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

CAMTA

Protein Properties

Length: 797aa MW: 89491.2 Da PI: 5.9684

Description

CAMTA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pd.00g038050.m01	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CG-1	176.2	4.2e-55	13	127	3	116
CG-1 3 ke.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenptf 94 +e ++rwlk+ e++ iL+n+ek++l+ e++++p+sgsl+L+n++++r+fr+DG++w+kkkdg+tv E+he+LKvg+ e+l+cyYah+e+np+f Pd.00g038050.m01 13 QEaQTRWLKPAEVLYILQNHEKFKLAPEPPQQPSSGSLFLFNKRVLRFFRRDGHHWRKKKDGRTVGEAHERLKVGNAETLNCYYAHGEDNPNF 105 5669*************************************************************************************** PP CG-1 95 qrrcywlLeeelekivlvhyle 116 qrr+yw+L+ ++e+ivlvhy+e Pd.00g038050.m01 106 QRRSYWMLDPAYEHIVLVHYRE 127 ******************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 797 aa Download sequence
MMQSGYNIND LFQEAQTRWL KPAEVLYILQ NHEKFKLAPE PPQQPSSGSL FLFNKRVLRF 60 FRRDGHHWRK KKDGRTVGEA HERLKVGNAE TLNCYYAHGE DNPNFQRRSY WMLDPAYEHI 120 VLVHYREISE GKSSTGTFAQ SPVSSSSFSH SPSDKTTQNR GSTSMISDLR EPYQNLSSPG 180 SIEVNSDVAI KKNGRENPDK LYGTGESDSS AKFDVSQALR QLEEQLSLNE DSFNEFVDDN 240 PNSDIMDRFN EFLDDTNGSD ILEDHSDMTN QDQFTAFHGP EYVVHDQFYG GRAQMQGNAN 300 NSDEHSQFIG QEFADRNKES VPWKEVLDSC KPSSVVEPKE KCLYELDTNE KLPSSFRSGP 360 TDGQEHYSDK FHVLSVSLSL PEEVDSFKLS PCSSAMGTHS DYYTSLFEQG QTGTLDSDIS 420 LTVAQKQKFT IREISPEWGY ATEATKIIPS EYFPPVNINF RDINGWTALH WAARFGREKM 480 VAVLIASGAS AGAVTDPNSQ DPIGKTPASI AAISGNKGLA GYLSEVSLTS HLSSLTLEES 540 ELSKGSAEVE AEITVNSISN RSLQGNEDQA SLKNTLAAVR NSAQAAARIQ SAFRAHSFRK 600 RQQKEAGVSI DDYGISSDDI QGLSAMSKLA FRNPRDYNSA AVSIQKKYRG WKGRKDFLAL 660 RQKVVKIQAH VRGYQLRKHY KVICWAVGIL DKVVLRWRRK GVGLRGFRHE TQSSEESEDE 720 DILKVFRKQK VDGAIEEAVS RVLSMVESPE ARQQYHRMLG RYHQAKAELG GTSGEADVPN 780 SLDDTFNIED IDMYQFP

Sequence ? help Back to Top

Protein Sequence Length: 797 aa Download sequence

MMQSGYNIND LFQEAQTRWL KPAEVLYILQ NHEKFKLAPE PPQQPSSGSL FLFNKRVLRF  60
FRRDGHHWRK KKDGRTVGEA HERLKVGNAE TLNCYYAHGE DNPNFQRRSY WMLDPAYEHI  120
VLVHYREISE GKSSTGTFAQ SPVSSSSFSH SPSDKTTQNR GSTSMISDLR EPYQNLSSPG  180
SIEVNSDVAI KKNGRENPDK LYGTGESDSS AKFDVSQALR QLEEQLSLNE DSFNEFVDDN  240
PNSDIMDRFN EFLDDTNGSD ILEDHSDMTN QDQFTAFHGP EYVVHDQFYG GRAQMQGNAN  300
NSDEHSQFIG QEFADRNKES VPWKEVLDSC KPSSVVEPKE KCLYELDTNE KLPSSFRSGP  360
TDGQEHYSDK FHVLSVSLSL PEEVDSFKLS PCSSAMGTHS DYYTSLFEQG QTGTLDSDIS  420
LTVAQKQKFT IREISPEWGY ATEATKIIPS EYFPPVNINF RDINGWTALH WAARFGREKM  480
VAVLIASGAS AGAVTDPNSQ DPIGKTPASI AAISGNKGLA GYLSEVSLTS HLSSLTLEES  540
ELSKGSAEVE AEITVNSISN RSLQGNEDQA SLKNTLAAVR NSAQAAARIQ SAFRAHSFRK  600
RQQKEAGVSI DDYGISSDDI QGLSAMSKLA FRNPRDYNSA AVSIQKKYRG WKGRKDFLAL  660
RQKVVKIQAH VRGYQLRKHY KVICWAVGIL DKVVLRWRRK GVGLRGFRHE TQSSEESEDE  720
DILKVFRKQK VDGAIEEAVS RVLSMVESPE ARQQYHRMLG RYHQAKAELG GTSGEADVPN  780
SLDDTFNIED IDMYQFP

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G67310.1	1e-117	CAMTA family protein