PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pd.00g028640.m01

Organism

Prunus domestica

Taxonomic ID

3758

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

MYB

Protein Properties

Length: 279aa MW: 30238.8 Da PI: 9.002

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pd.00g028640.m01	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	61	2.4e-19	5	50	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +g+W++eEd+ l ++v+++G+++W++I++ ++ gR++k+c++rw + Pd.00g028640.m01 5 KGPWSPEEDDALQRLVQKHGPRNWSLISKSIP-GRSGKSCRLRWCNQ 50 79****************************.*********985 PP
2	Myb_DNA-binding	55.8	1e-17	59	101	3	47
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 ++T+eEd+ +++a++++G++ W+tIar ++ gRt++ +k++w++ Pd.00g028640.m01 59 AFTPEEDDTIIRAHARFGNK-WATIARLLN-GRTDNAIKNHWNST 101 79****************.*****.*********986 PP

Sequence ? help Back to Top
Protein Sequence Length: 279 aa Download sequence
MDRIKGPWSP EEDDALQRLV QKHGPRNWSL ISKSIPGRSG KSCRLRWCNQ LSPQVEHRAF 60 TPEEDDTIIR AHARFGNKWA TIARLLNGRT DNAIKNHWNS TLKRKCSDIG VVFPGGGVGG 120 SGGYDGHFLH DHEQPPLKRS VSAGSGMPVS TGLYMSPGSP SGSDMSDSSV VPVMSLSECH 180 VYRPVARSGG VLPLAETTSS SNDNNSNNEK QKENDPTTSL SLSLPGVDSG EVSNRGMIRK 240 EVRSYMAGLE QSGICVQQAA SNDGFRNVAV KRIGVSRIE

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G23290.1	9e-81	MYB family protein