PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pd.00g027730.m01

Organism

Prunus domestica

Taxonomic ID

3758

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

C2H2

Protein Properties

Length: 439aa MW: 48619 Da PI: 9.9088

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pd.00g027730.m01	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	17.4	1.2e-05	71	93	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k F r nL+ H r H Pd.00g027730.m01 71 FVCEICNKGFQRDQNLQLHRRGH 93 89*******************88 PP
2	zf-C2H2	12.3	0.0005	147	169	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC +C+k + +s+ k H +t+ Pd.00g027730.m01 147 WKCDKCSKKYAVQSDWKAHSKTC 169 58*****************9998 PP

Sequence ? help Back to Top
Protein Sequence Length: 439 aa Download sequence
MQMMSGDGFS IIPSAIDGFA QEHQPNANPS SQKPNPNNPV AKKKRNLPGT PDPDAEVVAL 60 SPTTLMATNR FVCEICNKGF QRDQNLQLHR RGHNLPWKLK QRLNKEVKKK VYICPEKSCV 120 HHDPSRALGD LTGIKKHFSR KHGEKKWKCD KCSKKYAVQS DWKAHSKTCG TREYKCDCGT 180 LFSRKDSFIT HRAFCDALTE ESARLTTSVA GAATNLNFGN ETMLNNTMMH NGHAVQDGVS 240 QISQYGQGLI RQDFNGLDHH HQQHEKPSLS LWLNQQQANS NSHQLNLMDN MAANPNQLYV 300 TSSSSTAFPD MAQMPSANNL NQLFGSPNAM STFGSSNINL FGSGSASSST STSAVNNLSL 360 SSPIQEGGIH KGNSNLVVPQ YLFLYGLLPM RVVFKLHQIL GLAILKKMDL HLFMTWQVTT 420 GANRTLGQSK EENPRGAKR

Sequence ? help Back to Top

Protein Sequence Length: 439 aa Download sequence

MQMMSGDGFS IIPSAIDGFA QEHQPNANPS SQKPNPNNPV AKKKRNLPGT PDPDAEVVAL  60
SPTTLMATNR FVCEICNKGF QRDQNLQLHR RGHNLPWKLK QRLNKEVKKK VYICPEKSCV  120
HHDPSRALGD LTGIKKHFSR KHGEKKWKCD KCSKKYAVQS DWKAHSKTCG TREYKCDCGT  180
LFSRKDSFIT HRAFCDALTE ESARLTTSVA GAATNLNFGN ETMLNNTMMH NGHAVQDGVS  240
QISQYGQGLI RQDFNGLDHH HQQHEKPSLS LWLNQQQANS NSHQLNLMDN MAANPNQLYV  300
TSSSSTAFPD MAQMPSANNL NQLFGSPNAM STFGSSNINL FGSGSASSST STSAVNNLSL  360
SSPIQEGGIH KGNSNLVVPQ YLFLYGLLPM RVVFKLHQIL GLAILKKMDL HLFMTWQVTT  420
GANRTLGQSK EENPRGAKR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G03150.1	1e-103	C2H2 family protein