PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pd.00g022450.m01

Organism

Prunus domestica

Taxonomic ID

3758

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

MYB_related

Protein Properties

Length: 690aa MW: 75704.3 Da PI: 7.0125

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pd.00g022450.m01	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	26.2	1.9e-08	539	587	3	48
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHHT CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqkyl 48 +WT E +lv++v + G+g+W+ I r Rt ++k++w+++l Pd.00g022450.m01 539 AWTLVEVIKLVEGVSKCGTGRWSEIKRLSFasySYRTSVDLKDKWRNLL 587 7*************************9999999************96 PP

Sequence ? help Back to Top
Protein Sequence Length: 690 aa Download sequence
MILLSQAFFR KRLVFPTQSP ALRIGRFSLN FPLASTESTR SPLAHSYVVG VEGSDEGKCE 60 ESGVEKSSSS LSSPKQIADP VVYKLVRVEG DGRLVPATDD EVMEVEEFLV DEKIEIPVVT 120 DAGNVECISN EESSSGKSHK ESSEGPSHSE NTEPDAKLSA RLEEIVPSSD LSLDDSHINE 180 SARIGECSKP PDGPIESGSP ASVICNSSKP DFYTLKGEIC LDNLSIRELH GLFRATFGRE 240 TTVKDKLWLK RRIAMGLTNS CDVSTTTFTI IDNKLVNKGT DNSFQNADGM LTEGSDGEAK 300 NLGYETSPTS HSSQMENHQI VLGKRLGNLS VELDCGSDDL QMEHRGAKRV RKPTKRYIEE 360 LSEVESRDYT PKVIGSAKNT GQGQTSPKYC IRPPGNSPLN ERTIVTRLDS LGGSGVQVPF 420 VSRVRRSRPR KNIMALMKFD SSGMGVAAKL VQEALSVRSS PPESEHADKV LKVRSASEQI 480 QPQFAAEPEK DKRRSVMSTI ELGKNLGLKQ TDSSEDNSDD GIATVPTAKG GMRRKHHRAW 540 TLVEVIKLVE GVSKCGTGRW SEIKRLSFAS YSYRTSVDLK DKWRNLLKAS FAQTPPDDGI 600 NSRKHASVPI PAAILLKVRE LAEMHAQATC NIVYKKMLVV RIPNKGFMAI LNYNAMKGLR 660 IESQDDQKEH DPYADCAPET SSPTESRGSS

Sequence ? help Back to Top

Protein Sequence Length: 690 aa Download sequence

MILLSQAFFR KRLVFPTQSP ALRIGRFSLN FPLASTESTR SPLAHSYVVG VEGSDEGKCE  60
ESGVEKSSSS LSSPKQIADP VVYKLVRVEG DGRLVPATDD EVMEVEEFLV DEKIEIPVVT  120
DAGNVECISN EESSSGKSHK ESSEGPSHSE NTEPDAKLSA RLEEIVPSSD LSLDDSHINE  180
SARIGECSKP PDGPIESGSP ASVICNSSKP DFYTLKGEIC LDNLSIRELH GLFRATFGRE  240
TTVKDKLWLK RRIAMGLTNS CDVSTTTFTI IDNKLVNKGT DNSFQNADGM LTEGSDGEAK  300
NLGYETSPTS HSSQMENHQI VLGKRLGNLS VELDCGSDDL QMEHRGAKRV RKPTKRYIEE  360
LSEVESRDYT PKVIGSAKNT GQGQTSPKYC IRPPGNSPLN ERTIVTRLDS LGGSGVQVPF  420
VSRVRRSRPR KNIMALMKFD SSGMGVAAKL VQEALSVRSS PPESEHADKV LKVRSASEQI  480
QPQFAAEPEK DKRRSVMSTI ELGKNLGLKQ TDSSEDNSDD GIATVPTAKG GMRRKHHRAW  540
TLVEVIKLVE GVSKCGTGRW SEIKRLSFAS YSYRTSVDLK DKWRNLLKAS FAQTPPDDGI  600
NSRKHASVPI PAAILLKVRE LAEMHAQATC NIVYKKMLVV RIPNKGFMAI LNYNAMKGLR  660
IESQDDQKEH DPYADCAPET SSPTESRGSS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	425	431	RRSRPRK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G72650.1	9e-98	MYB_related family protein