PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pd.00g021930.m02

Organism

Prunus domestica

Taxonomic ID

3758

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

C2H2

Protein Properties

Length: 518aa MW: 55719.8 Da PI: 9.4107

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pd.00g021930.m02	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	16.1	3.2e-05	72	94	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C++C+k F r nL+ H r H Pd.00g021930.m02 72 FICEICNKGFQRDQNLQLHRRGH 94 89*******************88 PP
2	zf-C2H2	12.7	0.00038	148	170	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC +C+k++ +s+ k H +t+ Pd.00g021930.m02 148 WKCDKCSKRYAVQSDWKAHSKTC 170 58*****************9998 PP

Sequence ? help Back to Top
Protein Sequence Length: 518 aa Download sequence
MSNLTSASGE AASVSSGNRN EIGTSFSQQF FAPPPSQTQP ALKKKRNLPG NPDPEAEVIA 60 LSPKTLMATN RFICEICNKG FQRDQNLQLH RRGHNLPWKL KQRTSKEVRK KVYVCPEASC 120 VHHDPSRALG DLTGIKKHFC RKHGEKKWKC DKCSKRYAVQ SDWKAHSKTC GTREYRCDCG 180 TLFSRRDSFI THRAFCDALA EESARAITTG NNNPLLISPQ QQQLQQPGSS SASHHHHMNL 240 NQVQLAHQFQ DLHGFSLKKE QQSFTSLRPD LPPWLACPGP PNNTSIDLSS SSSIFSTRLD 300 QNFTQTHQDL SLHDHNSTAP NPNPNPNPSL GPTLPPFQPA PSPHMSATAL LQKAAQMGAT 360 MSSKNSTASA AAATSAGSSP QPMMRSHQNN HGHVPDFGGH VSSFGNNTAA AATTGAGGAS 420 ASRASFELDA FGSMPTVLNN SKKDTNNSNN PSSAHFNRSS ASDEGGGHGE GLTRDFLGLR 480 ALSHSDILNI AGLGSCVTSA ATAAASSSLD QTHKPWQG

Sequence ? help Back to Top

Protein Sequence Length: 518 aa Download sequence

MSNLTSASGE AASVSSGNRN EIGTSFSQQF FAPPPSQTQP ALKKKRNLPG NPDPEAEVIA  60
LSPKTLMATN RFICEICNKG FQRDQNLQLH RRGHNLPWKL KQRTSKEVRK KVYVCPEASC  120
VHHDPSRALG DLTGIKKHFC RKHGEKKWKC DKCSKRYAVQ SDWKAHSKTC GTREYRCDCG  180
TLFSRRDSFI THRAFCDALA EESARAITTG NNNPLLISPQ QQQLQQPGSS SASHHHHMNL  240
NQVQLAHQFQ DLHGFSLKKE QQSFTSLRPD LPPWLACPGP PNNTSIDLSS SSSIFSTRLD  300
QNFTQTHQDL SLHDHNSTAP NPNPNPNPSL GPTLPPFQPA PSPHMSATAL LQKAAQMGAT  360
MSSKNSTASA AAATSAGSSP QPMMRSHQNN HGHVPDFGGH VSSFGNNTAA AATTGAGGAS  420
ASRASFELDA FGSMPTVLNN SKKDTNNSNN PSSAHFNRSS ASDEGGGHGE GLTRDFLGLR  480
ALSHSDILNI AGLGSCVTSA ATAAASSSLD QTHKPWQG

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	99	111	KLKQRTSKEVRKK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G03840.1	1e-114	C2H2 family protein