PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pd.00g017160.m01
Organism
Prunus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family GRAS
Protein Properties Length: 542aa    MW: 60496.2 Da    PI: 4.7916
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pd.00g017160.m01genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS450.21.3e-1371735422374
              GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfs 94 
                       ++lL++cA a+s+g+ + a++++++l++++s +gdp qR+aay++e+Laar+a+s++ ly++l+++e +   ss +laa+++++ev+P++kf+
  Pd.00g017160.m01 173 KQLLYNCAGALSEGNIKGASTMISELRQMVSIQGDPAQRIAAYMVEGLAARVASSGKFLYRSLKCKEPP---SSYRLAAMQVLFEVCPCFKFG 262
                       589*****************************************************************9...9******************** PP

              GRAS  95 hltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakr 185
                       +++aN aI ea + e++vHiiDfdi+qG Q++ L+q+La+R ++pp+lR+Tgv++pes+      l+ +g+rL+k+Ae+l+vpfef++ va+r
  Pd.00g017160.m01 263 FMAANGAIIEACKDEKKVHIIDFDINQGNQYIKLIQTLANRLGKPPHLRLTGVDDPESVqrPVGGLNIIGQRLEKLAEALKVPFEFQA-VASR 354
                       *********************************************************99888899***********************.7*** PP

              GRAS 186 ledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpre 278
                       ++ +++++L+++pgEal Vn+++qlh+++desvs+ ++rd++L++vksl+Pk+v+vveq++++n+++F+ rf+ea +yysa+fdsl+a lpre
  Pd.00g017160.m01 355 TSIVNTSMLDCRPGEALLVNFAFQLHHMPDESVSTVNQRDQLLRMVKSLRPKLVTVVEQDVNTNTTPFFPRFIEAYNYYSAVFDSLDAALPRE 447
                       ********************************************************************************************* PP

              GRAS 279 seerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvS 371
                       s++r++vE+++l+r+ivn+vaceg+er+er e ++kWr+r+++aGF++ p+s++++++++ l+r + ++ y+v+ee g+l +gW++++L+++S
  Pd.00g017160.m01 448 SQDRMNVEKQCLARDIVNIVACEGEERIERYEVAGKWRARMTMAGFTSCPMSTSITDSIRELIRPYCDR-YKVKEEAGALHFGWENKSLIVAS 539
                       ******************************************************************966.*********************** PP

              GRAS 372 aWr 374
                       aWr
  Pd.00g017160.m01 540 AWR 542
                       **8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 542 aa     Download sequence    
MSLVRPAELS ATSYRNPKLY SPKGSNDSST LSTQTFSSDK HKTLYVADPY SAESYEDFLD  60
SPMEEIADPS SSGISGNSTN PQDYFESQSP DADSFDEDKM RLKLQELERA LLEDNDEEIN  120
CSSQSMEVDG EWTDPIQNEL LHDSPKESSS SESNVSSISS NKEISQASLQ TPKQLLYNCA  180
GALSEGNIKG ASTMISELRQ MVSIQGDPAQ RIAAYMVEGL AARVASSGKF LYRSLKCKEP  240
PSSYRLAAMQ VLFEVCPCFK FGFMAANGAI IEACKDEKKV HIIDFDINQG NQYIKLIQTL  300
ANRLGKPPHL RLTGVDDPES VQRPVGGLNI IGQRLEKLAE ALKVPFEFQA VASRTSIVNT  360
SMLDCRPGEA LLVNFAFQLH HMPDESVSTV NQRDQLLRMV KSLRPKLVTV VEQDVNTNTT  420
PFFPRFIEAY NYYSAVFDSL DAALPRESQD RMNVEKQCLA RDIVNIVACE GEERIERYEV  480
AGKWRARMTM AGFTSCPMST SITDSIRELI RPYCDRYKVK EEAGALHFGW ENKSLIVASA  540
WR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G21450.10.0GRAS family protein