PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pd.00g006930.m01

Organism

Prunus domestica

Taxonomic ID

3758

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

AP2

Protein Properties

Length: 829aa MW: 91902.3 Da PI: 6.4306

Description

AP2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pd.00g006930.m01	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	52.7	1.1e-16	172	221	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV++++++grW+++I+d + k+++lg f+ta Aa+a+++a+ k++g Pd.00g006930.m01 172 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHSAARAYDRAAIKFRG 221 78*****************......55**********************997 PP

Sequence ? help Back to Top
Protein Sequence Length: 829 aa Download sequence
MLDLNVNITL TTDASFDYEK AKDMEVEELP QGSRTQMEDS GTSNSSVVNA EEAPTPSNAG 60 EEDSTNNTTS SFIFDILKKD KDGLCNTTYC GGAKDQNPSL QFVTRSLFPV TGDGGGGKEA 120 ECGLGLSSTA RPQWLNLSFA ESGGQAQAEL RIMQQKKPQP RKSRRGPRSR SSQYRGVTFY 180 RRTGRWESHI WDCGKQVYLG GFDTAHSAAR AYDRAAIKFR GVDADINFTL GDYEEDMKQL 240 GHLNKEEFVH VLRRQSTGAS RGNSKYRGVA LPKCGGAGGI WEARMAQFPE KKVFEKEGIK 300 CNTGREAAAV TNFVDPSIYE GEVVLDASIE GSGHNLDLSL GISQPSSGQK GNGNQGDFQF 360 RYKERPMVNG SAASAAVGQT PHVLTMVAKH PALYSGMYPG FLQKHEEMDS DHNRAQAVSS 420 LRYTNWAWQV HGNSHSVSPV QVFSIAASSG FPSSMASTAP PAANYFPPNL QGSASASNNV 480 GRLPFPTPYS ISQPQIGSNF NVLVVRCVSS VPHIDTSEWN EPVSCSEVGD GHKATVDENA 540 KPSIPVRAYF FSTSVDLRSL VEQNRLNFIP PTSRMTNYVV FRFGEPSDSN NGLGLSLSGS 600 DCCYMVVFQY GSIVLFNVRE HEIDGYLKIV EKHASGLLPE MRKDEYEVRE KPALHTWMEG 660 GLDYIMLQYL NVDGIRTIGS VLGQSIALDY YVRQVDGMVA EFTDINREME TTGKFKMKRK 720 KLFQLVGKAN SNLADVILKL GLFERSDIAW KDAKYAQIWE YLRDEFELTQ RFASLDFKLK 780 FVEHNIRFLQ EILQNRKSDF LEWLIIALIG AEILLSLYDI VHRSALATL

Sequence ? help Back to Top

Protein Sequence Length: 829 aa Download sequence

MLDLNVNITL TTDASFDYEK AKDMEVEELP QGSRTQMEDS GTSNSSVVNA EEAPTPSNAG  60
EEDSTNNTTS SFIFDILKKD KDGLCNTTYC GGAKDQNPSL QFVTRSLFPV TGDGGGGKEA  120
ECGLGLSSTA RPQWLNLSFA ESGGQAQAEL RIMQQKKPQP RKSRRGPRSR SSQYRGVTFY  180
RRTGRWESHI WDCGKQVYLG GFDTAHSAAR AYDRAAIKFR GVDADINFTL GDYEEDMKQL  240
GHLNKEEFVH VLRRQSTGAS RGNSKYRGVA LPKCGGAGGI WEARMAQFPE KKVFEKEGIK  300
CNTGREAAAV TNFVDPSIYE GEVVLDASIE GSGHNLDLSL GISQPSSGQK GNGNQGDFQF  360
RYKERPMVNG SAASAAVGQT PHVLTMVAKH PALYSGMYPG FLQKHEEMDS DHNRAQAVSS  420
LRYTNWAWQV HGNSHSVSPV QVFSIAASSG FPSSMASTAP PAANYFPPNL QGSASASNNV  480
GRLPFPTPYS ISQPQIGSNF NVLVVRCVSS VPHIDTSEWN EPVSCSEVGD GHKATVDENA  540
KPSIPVRAYF FSTSVDLRSL VEQNRLNFIP PTSRMTNYVV FRFGEPSDSN NGLGLSLSGS  600
DCCYMVVFQY GSIVLFNVRE HEIDGYLKIV EKHASGLLPE MRKDEYEVRE KPALHTWMEG  660
GLDYIMLQYL NVDGIRTIGS VLGQSIALDY YVRQVDGMVA EFTDINREME TTGKFKMKRK  720
KLFQLVGKAN SNLADVILKL GLFERSDIAW KDAKYAQIWE YLRDEFELTQ RFASLDFKLK  780
FVEHNIRFLQ EILQNRKSDF LEWLIIALIG AEILLSLYDI VHRSALATL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G28550.1	9e-73	AP2 family protein