PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PCP044866.1

Organism

Pyrus communis

Taxonomic ID

23211

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus

Family

C2H2

Protein Properties

Length: 632aa MW: 69590.3 Da PI: 8.6154

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PCP044866.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	16.8	1.9e-05	122	144	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k F r nL+ H r H PCP044866.1 122 FVCEICNKGFQRDQNLQLHRRGH 144 89*******************88 PP
2	zf-C2H2	15.2	6e-05	198	220	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC +C+k + +s+ k H++t+ PCP044866.1 198 WKCDKCSKKYAVQSDWKAHQKTC 220 58*******************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 632 aa Download sequence
MSNITGDVEE GSFSSGNNTG ELEVHQDQQQ NHLHGSNSGG ASGAQSNSNG SVTHQQPQQP 60 PLKKKRNLPG TPGKYFYVET HHWTLRVITG EYLPIFGAML ESYPSAEVIA LSPTTLMATN 120 RFVCEICNKG FQRDQNLQLH RRGHNLPWKL RQRTTTEVRK RVYICPEPTC VHHNPARALG 180 DLTGIKKHFS RKHGEKKWKC DKCSKKYAVQ SDWKAHQKTC GTREYKCDCG TIFSRRDSFI 240 THRAFCDALA EENNKVNQMP MPHDQLISSM AMNTNTSPMG GRVSEFLSYD INTNKNKLPE 300 DLVPMPFKSM NMNIPGGGGG GGGPGMFSNT TGSLFGGPRS VSSTSASSLQ LSSNNNNSSS 360 GFNYLHHQET KNGGSSLSSI TGVAQMSATA LLQKAAKMGA TASNSTINSP MMQKSFVSSM 420 AGPDHGHLSS PNSILNNNIR PPPSYDHQPH HFQQQPQPSD PQSHNSHNMI GGFTDQLIQK 480 GTQEMSQPFD HHSNNPTASS AMNDMGLFSQ VFMGIGGGGP HQNYQNHQAM LKNFEQDHHD 540 HQDINSPNNN SSNTNSTHRM NSALGPCTTL DLLGIGGSRP PSLHAQLHHH QQRLDLEAMS 600 QHRLPAMMNP FQQQQQQRSQ GDSAMEKQIW DV

Sequence ? help Back to Top

Protein Sequence Length: 632 aa Download sequence

MSNITGDVEE GSFSSGNNTG ELEVHQDQQQ NHLHGSNSGG ASGAQSNSNG SVTHQQPQQP  60
PLKKKRNLPG TPGKYFYVET HHWTLRVITG EYLPIFGAML ESYPSAEVIA LSPTTLMATN  120
RFVCEICNKG FQRDQNLQLH RRGHNLPWKL RQRTTTEVRK RVYICPEPTC VHHNPARALG  180
DLTGIKKHFS RKHGEKKWKC DKCSKKYAVQ SDWKAHQKTC GTREYKCDCG TIFSRRDSFI  240
THRAFCDALA EENNKVNQMP MPHDQLISSM AMNTNTSPMG GRVSEFLSYD INTNKNKLPE  300
DLVPMPFKSM NMNIPGGGGG GGGPGMFSNT TGSLFGGPRS VSSTSASSLQ LSSNNNNSSS  360
GFNYLHHQET KNGGSSLSSI TGVAQMSATA LLQKAAKMGA TASNSTINSP MMQKSFVSSM  420
AGPDHGHLSS PNSILNNNIR PPPSYDHQPH HFQQQPQPSD PQSHNSHNMI GGFTDQLIQK  480
GTQEMSQPFD HHSNNPTASS AMNDMGLFSQ VFMGIGGGGP HQNYQNHQAM LKNFEQDHHD  540
HQDINSPNNN SSNTNSTHRM NSALGPCTTL DLLGIGGSRP PSLHAQLHHH QQRLDLEAMS  600
QHRLPAMMNP FQQQQQQRSQ GDSAMEKQIW DV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G44160.1	1e-90	C2H2 family protein