PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PCP044787.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus
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Family | LBD | ||||||||
Protein Properties | Length: 178aa MW: 20045.8 Da PI: 8.3041 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 116.3 | 1.9e-36 | 6 | 105 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallk 98 +CaaCk++r+kC++dC+lapyfp+++p +f n+ klFG+s++ kl+++lp++ r+ ams+++ eA+ ra+dPv G+++v+++l + +++++ael++++ PCP044787.1 6 SCAACKHQRKKCPEDCPLAPYFPSNHPTNFHNALKLFGVSRLAKLVTDLPPHLRTPAMSTIFVEADHRAKDPVGGCHAVVRSLLWSINKHQAELDRVR 103 6*********************************************************************************************9988 PP DUF260 99 ee 100 + PCP044787.1 104 YQ 105 66 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 178 aa Download sequence |
MTKSRSCAAC KHQRKKCPED CPLAPYFPSN HPTNFHNALK LFGVSRLAKL VTDLPPHLRT 60 PAMSTIFVEA DHRAKDPVGG CHAVVRSLLW SINKHQAELD RVRYQLELCR RGGNVMPMAQ 120 CLGDFKYNVG AGNVYDQTQF HLVQKNVFQE QEEQGHIGGG VVPQPHEEQS NVFEIRSD |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G13850.1 | 3e-28 | LBD family protein |