PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PCP044772.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 213aa MW: 24887.8 Da PI: 10.4518 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 92.6 | 1.9e-29 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krien++ rqvtfskRr+g+lKKA+E+SvLCda+va+i+fs++gkl+eys+ PCP044772.1 9 KRIENTISRQVTFSKRRTGLLKKAHEISVLCDADVALIVFSTKGKLFEYST 59 79***********************************************96 PP | |||||||
2 | K-box | 72.3 | 1.4e-24 | 78 | 145 | 4 | 71 |
K-box 4 ssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKne 71 ++ + ++++ +e+++ e+ kL ++ie +qr++R++ GedLe+Lsl+eLq+LeqqL+++lk+iR++K PCP044772.1 78 RQLNGTNSESQENWSVEYPKLAARIEVIQRKLRNFTGEDLEPLSLRELQNLEQQLDTALKRIRTRKVM 145 56667778889******************************************************965 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 213 aa Download sequence |
MGRGKVQLKR IENTISRQVT FSKRRTGLLK KAHEISVLCD ADVALIVFST KGKLFEYSTD 60 SSMERILDRY EQYTFAERQL NGTNSESQEN WSVEYPKLAA RIEVIQRKLR NFTGEDLEPL 120 SLRELQNLEQ QLDTALKRIR TRKVMKLPQL ILNLSCIIYR YATSGQLINK RFLINTNSIY 180 NSGIFRTNSC MNPFQRCTRR YKVIPHASVW TLI |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G69120.1 | 7e-72 | MIKC_MADS family protein |