PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PCP044636.1

Organism

Pyrus communis

Taxonomic ID

23211

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus

Family

Trihelix

Protein Properties

Length: 424aa MW: 48760.7 Da PI: 6.3897

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PCP044636.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	86.5	3.2e-27	69	150	2	86
trihelix 2 WtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 W ++e++ Li++rr m+ ++++k++k+lWe++s+kmre+gf rsp++C++kw+nl k++kk k+++++ s +++y++++e PCP044636.1 69 WVQDETRSLIALRRGMDGLFNTSKSNKHLWEQISAKMREKGFDRSPTMCTDKWRNLLKEFKKAKHHDRGS---GSAKMSYYKEIE 150 ******************************************************************84...556899*997 PP

Sequence ? help Back to Top
Protein Sequence Length: 424 aa Download sequence
MYLPEKARPI DFYKEEASRD MMMEVVVSNE DLPQSQAHLH QPPPQQMLMG DSSGEDHEVR 60 APKKRAETWV QDETRSLIAL RRGMDGLFNT SKSNKHLWEQ ISAKMREKGF DRSPTMCTDK 120 WRNLLKEFKK AKHHDRGSGS AKMSYYKEIE EILKDRSKNT QYKSPTPPKV DSFVQFSDKG 180 IEQWGDLSFD LPCFNVPYQE RNRPCNLRRT AAQIRNFFDG FSAHAGIEDA SISFAPVEAS 240 GRPTLNLERR LDHDGHPLAI TAADAVTAGG VPPWNWRETP GNGVEGQAYG GRVILVNWGD 300 YTRRIGIDGT ADAIKDAIKS AFRLRTKRSF WLEDEDQIVR SLDRDMPLGN YTLHLDEGVA 360 IKVCLYDESD HIPVHTEEKL FFTEEDYREF LSRRGWSYLR EFDGYRNIEN MDDLRPGAIY 420 RGVS

Sequence ? help Back to Top

Protein Sequence Length: 424 aa Download sequence

MYLPEKARPI DFYKEEASRD MMMEVVVSNE DLPQSQAHLH QPPPQQMLMG DSSGEDHEVR  60
APKKRAETWV QDETRSLIAL RRGMDGLFNT SKSNKHLWEQ ISAKMREKGF DRSPTMCTDK  120
WRNLLKEFKK AKHHDRGSGS AKMSYYKEIE EILKDRSKNT QYKSPTPPKV DSFVQFSDKG  180
IEQWGDLSFD LPCFNVPYQE RNRPCNLRRT AAQIRNFFDG FSAHAGIEDA SISFAPVEAS  240
GRPTLNLERR LDHDGHPLAI TAADAVTAGG VPPWNWRETP GNGVEGQAYG GRVILVNWGD  300
YTRRIGIDGT ADAIKDAIKS AFRLRTKRSF WLEDEDQIVR SLDRDMPLGN YTLHLDEGVA  360
IKVCLYDESD HIPVHTEEKL FFTEEDYREF LSRRGWSYLR EFDGYRNIEN MDDLRPGAIY  420
RGVS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G13450.1	0.0	Trihelix family protein