PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PCP044628.1

Organism

Pyrus communis

Taxonomic ID

23211

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus

Family

bHLH

Protein Properties

Length: 534aa MW: 58416.9 Da PI: 8.4589

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PCP044628.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	46.7	5.5e-15	325	371	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 hn ErrRRdriN+++ L+el+P + K +Ka++L +A+ Y+ksLq PCP044628.1 325 VHNLSERRRRDRINEKMKALQELIPRC-----NKSDKASMLDEAIVYLKSLQ 371 6***********************8.....6****************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 534 aa Download sequence
MNRRVPDFEM DYDYLLPTTS ALNRPRKSTM PEDDIMELLW QNGQVVMQSQ NQRSSVNSKR 60 SHQSKYDVVL PDDGGGITRP TPQPQPQPPA QNPHLFMQDD EMASWLQYPL VDDPFSAGLL 120 YPDSSTSEHR TPQVSGPAPP PAPASRPPIH RPRRTELQNF LQSDRTNNNR PMMSETAPSS 180 SKKSVVRETT TVVDSSDTPL VGPSSRALDS RPDGACGGLA NGARSLTAAT AATSFPGKEV 240 TTCEMSLTSS PGGSSASASE STEPESAPKL PLTADNRKRQ RKGREAPAAD DTEFQSKDVE 300 FESGNGKKQV RGSTSSTKRS RAAEVHNLSE RRRRDRINEK MKALQELIPR CNKSDKASML 360 DEAIVYLKSL QLQVQMMSMG YGMIPMMLPG VQQMMSVPMG MGIGMGMGMG MEMAGISRPM 420 MPFPNVIAGS PMPTAAAAHM GPRFPIPPFH MQPIPASDPT GVPAVNQTDQ MINSLGAQNP 480 NQSHMPNFAD PYQQFFSPQQ MQLPLQHKQA MPQPTTGKPS SNRRPETHEN HQSG

Sequence ? help Back to Top

Protein Sequence Length: 534 aa Download sequence

MNRRVPDFEM DYDYLLPTTS ALNRPRKSTM PEDDIMELLW QNGQVVMQSQ NQRSSVNSKR  60
SHQSKYDVVL PDDGGGITRP TPQPQPQPPA QNPHLFMQDD EMASWLQYPL VDDPFSAGLL  120
YPDSSTSEHR TPQVSGPAPP PAPASRPPIH RPRRTELQNF LQSDRTNNNR PMMSETAPSS  180
SKKSVVRETT TVVDSSDTPL VGPSSRALDS RPDGACGGLA NGARSLTAAT AATSFPGKEV  240
TTCEMSLTSS PGGSSASASE STEPESAPKL PLTADNRKRQ RKGREAPAAD DTEFQSKDVE  300
FESGNGKKQV RGSTSSTKRS RAAEVHNLSE RRRRDRINEK MKALQELIPR CNKSDKASML  360
DEAIVYLKSL QLQVQMMSMG YGMIPMMLPG VQQMMSVPMG MGIGMGMGMG MEMAGISRPM  420
MPFPNVIAGS PMPTAAAAHM GPRFPIPPFH MQPIPASDPT GVPAVNQTDQ MINSLGAQNP  480
NQSHMPNFAD PYQQFFSPQQ MQLPLQHKQA MPQPTTGKPS SNRRPETHEN HQSG

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	330	335	ERRRRD

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G20180.2	1e-67	bHLH family protein