PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PCP044622.1

Organism

Pyrus communis

Taxonomic ID

23211

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus

Family

AP2

Protein Properties

Length: 802aa MW: 89010.8 Da PI: 5.7766

Description

AP2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PCP044622.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	28.7	3.3e-09	172	224	1	56
AP2 1 sgykGVrwdkkrgrWvAeIrdpse.ngkrkrfslgkfgtaeeAakaaiaarkklege 56 s ++GV+++ gr+ A I+d +e k+ g f+ +e+Aa+a++ a++kl+ge PCP044622.1 172 SVFRGVSRHT-EGRFQAFIWDGTEpE---KKGKTGGFDKEEDAARAHDLAALKLWGE 224 689**998.8*****65533...5555688****************997 PP
2	AP2	31.7	3.7e-10	266	314	1	52
AP2 1 sgykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkk 52 s y+GV++ + +++W A++ g ++ +lg+f t+e+Aa+a++ + + PCP044622.1 266 SNYRGVSRISGKKKWQARLGR----GkRHNGLYLGTFETEEQAARAYDIGAIR 314 57**************666....54459****************87766 PP

Sequence ? help Back to Top
Protein Sequence Length: 802 aa Download sequence
MNSSDSFCYS SPHSRRSTST VPKKSSYLGF VNDFDIHGSQ RYGLSPPVQM QSHFYANVQN 60 EGFTNFHNNT SEAMQDNATM QPQSPSILES ASFETPNYNS FSFLTNPFSS SLPLECDTGL 120 IGENYGKNNA VNIFGGPLMS IDEDNKGCTS PMNRQRRHPR QNSKHTIGNK KSVFRGVSRH 180 TEGRFQAFIW DGTEPEKKGK TGGFDKEEDA ARAHDLAALK LWGESAKLNF PTEQYKKDLE 240 EMQTMTKQDY FLHIRRASPS FAKGLSNYRG VSRISGKKKW QARLGRGKRH NGLYLGTFET 300 EEQAARAYDI GAIRTKGTDA ATNFDVSEND VNNILQSEKL PIGEGASKSL KFASSGDDFI 360 QSRRKTNKKT PFLQPYEDHR LGILNRISTQ PSSPFQETTL QTLPIYPNNS NRSQYVDPFL 420 QDFQNTDNIQ NNQLLQYYSV NPRSQVQDVP AGYQNANFET NRIFSHWDGN TYGGGDNSVG 480 SAINIGPVIP SQNHELNQFQ YYNNDAYGQK LSQNPNSSYL NSHVSAYPQT INPTFLPGLN 540 NLHTCSSYIG ECSSSQAEVS LGTILGETDK SLGSDIVSEV VPVADLEVHV NPIERNSISV 600 LPEDRENRSA GYQNANFETN RIFSHWDCNT DGGGDNSVGS AINIGPVIPS QNHELNQFQY 660 YNNEAYGQKL SQNPNSSYLL QNSHVSAYPK TINSTFLPGL NNLHTCSSYI GECSSSQAEV 720 SLDTILGETD ESLGSDIVSE VVPVADLEVH VNPIERILVL PGDRENGRVV EVSGVSKSGH 780 VLDNSSWKDL LFMSLNDPDC KL

Sequence ? help Back to Top

Protein Sequence Length: 802 aa Download sequence

MNSSDSFCYS SPHSRRSTST VPKKSSYLGF VNDFDIHGSQ RYGLSPPVQM QSHFYANVQN  60
EGFTNFHNNT SEAMQDNATM QPQSPSILES ASFETPNYNS FSFLTNPFSS SLPLECDTGL  120
IGENYGKNNA VNIFGGPLMS IDEDNKGCTS PMNRQRRHPR QNSKHTIGNK KSVFRGVSRH  180
TEGRFQAFIW DGTEPEKKGK TGGFDKEEDA ARAHDLAALK LWGESAKLNF PTEQYKKDLE  240
EMQTMTKQDY FLHIRRASPS FAKGLSNYRG VSRISGKKKW QARLGRGKRH NGLYLGTFET  300
EEQAARAYDI GAIRTKGTDA ATNFDVSEND VNNILQSEKL PIGEGASKSL KFASSGDDFI  360
QSRRKTNKKT PFLQPYEDHR LGILNRISTQ PSSPFQETTL QTLPIYPNNS NRSQYVDPFL  420
QDFQNTDNIQ NNQLLQYYSV NPRSQVQDVP AGYQNANFET NRIFSHWDGN TYGGGDNSVG  480
SAINIGPVIP SQNHELNQFQ YYNNDAYGQK LSQNPNSSYL NSHVSAYPQT INPTFLPGLN  540
NLHTCSSYIG ECSSSQAEVS LGTILGETDK SLGSDIVSEV VPVADLEVHV NPIERNSISV  600
LPEDRENRSA GYQNANFETN RIFSHWDCNT DGGGDNSVGS AINIGPVIPS QNHELNQFQY  660
YNNEAYGQKL SQNPNSSYLL QNSHVSAYPK TINSTFLPGL NNLHTCSSYI GECSSSQAEV  720
SLDTILGETD ESLGSDIVSE VVPVADLEVH VNPIERILVL PGDRENGRVV EVSGVSKSGH  780
VLDNSSWKDL LFMSLNDPDC KL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G51190.1	4e-55	AP2 family protein