PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PCP044407.1

Organism

Pyrus communis

Taxonomic ID

23211

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus

Family

Trihelix

Protein Properties

Length: 659aa MW: 74471 Da PI: 8.3401

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PCP044407.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	29.4	2.1e-09	37	107	8	79
trihelix 8 laLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstc 79 l L++ + +e + ++ + ++W+ +++++++ g++r+ q + kwe l +yk ik++e k ++ +s + PCP044407.1 37 LILVNEVAAVEGDCLKALSSFQKWKIIAQNCSALGVSRTLDQYRRKWEALFSEYKGIKQWEAKSRASDS-YW 107 5566666677777777778889****************************************9754444.55 PP

Sequence ? help Back to Top
Protein Sequence Length: 659 aa Download sequence
MKPEQTPSQL DRSHRSSGNR RSTRSQAAPD WNPTDELILV NEVAAVEGDC LKALSSFQKW 60 KIIAQNCSAL GVSRTLDQYR RKWEALFSEY KGIKQWEAKS RASDSYWVLG IERRKRNGLP 120 ENFDQELFRG IDKLVRVRGN QSDTDPDSDP EDEAEAEPEE EPDSKRRRRR STSQKSCPRE 180 NSIRSCKIEK PQETHAEGKP QKTHAEEKPV GSGLKAIPPK SLAEEHPQKS CVKKKLTNSQ 240 RKEEAISIEE QEKIAAMKLH ESADLIRAIV TEKPDHEAAG VKSTGDLQTD FVRCQGDRVI 300 ACLGDIVKTL DQLRHLVQEC EYFRVSLKWW ALDHSSCLGK FVSYFTFIFL TILVPILTSL 360 SLNTSSDPIS FNKLVQLPES GLAAIGFITL SGFFRKYGLR QLLFLDGLGD DSGFVRREYT 420 RELNKAFKTG VFLLVCVMFR LTCELQILRF KGLHKLFEGR ESESSIIFQE QVRIRKQLWV 480 TSHRYRFFII GCMFTITVSQ FGALLLVLAS KTEKTFLNSG DLVVCSAVEL SGLFLCLMEA 540 ARITHRAQGV VAIATRWHML LTCPSAGSEQ QWKSRQISSE TNTRCGESDS EHSSDISTSV 600 PPQEPSSFQT RQALVAYLSH NNGGITLYGF ALDRGLLHTL FAFEFSLVLW VLSKVVVLS

Sequence ? help Back to Top

Protein Sequence Length: 659 aa Download sequence

MKPEQTPSQL DRSHRSSGNR RSTRSQAAPD WNPTDELILV NEVAAVEGDC LKALSSFQKW  60
KIIAQNCSAL GVSRTLDQYR RKWEALFSEY KGIKQWEAKS RASDSYWVLG IERRKRNGLP  120
ENFDQELFRG IDKLVRVRGN QSDTDPDSDP EDEAEAEPEE EPDSKRRRRR STSQKSCPRE  180
NSIRSCKIEK PQETHAEGKP QKTHAEEKPV GSGLKAIPPK SLAEEHPQKS CVKKKLTNSQ  240
RKEEAISIEE QEKIAAMKLH ESADLIRAIV TEKPDHEAAG VKSTGDLQTD FVRCQGDRVI  300
ACLGDIVKTL DQLRHLVQEC EYFRVSLKWW ALDHSSCLGK FVSYFTFIFL TILVPILTSL  360
SLNTSSDPIS FNKLVQLPES GLAAIGFITL SGFFRKYGLR QLLFLDGLGD DSGFVRREYT  420
RELNKAFKTG VFLLVCVMFR LTCELQILRF KGLHKLFEGR ESESSIIFQE QVRIRKQLWV  480
TSHRYRFFII GCMFTITVSQ FGALLLVLAS KTEKTFLNSG DLVVCSAVEL SGLFLCLMEA  540
ARITHRAQGV VAIATRWHML LTCPSAGSEQ QWKSRQISSE TNTRCGESDS EHSSDISTSV  600
PPQEPSSFQT RQALVAYLSH NNGGITLYGF ALDRGLLHTL FAFEFSLVLW VLSKVVVLS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	165	170	KRRRRR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G31270.1	2e-50	Trihelix family protein