PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PCP044206.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus
Family C3H
Protein Properties Length: 317aa    MW: 35888.1 Da    PI: 6.8311
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PCP044206.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH47.23.5e-15240264226
                  -S---SGGGGTS--TTTTT-SS-SS CS
      zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                  ktelC+ + +tGtC+yG++C+FaHg
  PCP044206.1 240 KTELCNKWEETGTCPYGENCQFAHG 264
                  9***********************9 PP

2zf-CCCH26.21.4e-08277302126
                  --S---SGGGGTS--TTTTT-SS-SS CS
      zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                  ykt lCr  +++G C+yG rC+F H+
  PCP044206.1 277 YKTQLCRMVLAGGACPYGHRCHFRHS 302
                  9**********************998 PP

Sequence ? help Back to Top
Protein Sequence    Length: 317 aa     Download sequence    
METNTNTAFP NSPDSSREFG DDFDPMYRSL FPPKYTLPSS LSLTPSTRST SFSDSDSDDH  60
HHHSTTSHNL NQAQLVLEYQ ELRDHYDLCN SHLRNLTKEL DSLRRENAQL RSANTDLVKL  120
LSSQAAFQSC LLSSSSSSAF QSPMAASFLD DFRRLGFGYL SPHDGVISEE SSDISPTSVI  180
ERNRLVDTDR ISLPKSISVR SSTRPQVPNQ LVSRPVTWMM LAFAQVQQSE MKVFNQGMLK  240
TELCNKWEET GTCPYGENCQ FAHGVRELRP VLRHPRYKTQ LCRMVLAGGA CPYGHRCHFR  300
HSLTEQEKLQ LAISESF
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66810.11e-58C3H family protein