PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PCP044133.1

Organism

Pyrus communis

Taxonomic ID

23211

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus

Family

NF-YB

Protein Properties

Length: 660aa MW: 73004.9 Da PI: 6.1336

Description

NF-YB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PCP044133.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YB	152	1.1e-47	1	88	8	95
NF-YB 8 lPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyreleg 95 +Pianv+rim+++lP +akis+daket+qecvse+i+f+t+ea+++cqre+rkt++++d+lwa+++lGf++yvepl++yl++yre e+ PCP044133.1 1 MPIANVIRIMRRILPPHAKISDDAKETMQECVSEYIAFITGEANERCQREQRKTVTAEDVLWAMGKLGFDNYVEPLTIYLQRYRESES 88 8************************************************************************************987 PP

Sequence ? help Back to Top
Protein Sequence Length: 660 aa Download sequence
MPIANVIRIM RRILPPHAKI SDDAKETMQE CVSEYIAFIT GEANERCQRE QRKTVTAEDV 60 LWAMGKLGFD NYVEPLTIYL QRYRESESSD RSQFVKREER QLMDYYPPGH AGQVAMMPPP 120 PPSYGPGYYF GPQHGPPMYD PLMMGMFRDG SSSGAGGGGS SSASGAQGEN SLGGFDPVRT 180 RWGDLTRLVT SNDHHCLKKG LSCLINRRNE YIVALTIESV LGKLDGIKSA TVSPIEGQAA 240 VNYIPELINE AVEDAGFPVS EFPQHDVAVC RLRIKGRVCT SCSESVECAL RMVDGVRNAV 300 VGLSLEEAKV RFDPNLTDTS CIIQAIEDAG FGAELVSSGN DVNKLHIKLE RVDSPEDMTI 360 VQSIVESVEG VSNVKVDLAE KKVTITYDSD LTGPRSLIRC IEEAGHESKV YQASLSVPPR 420 PREAERKHEI QMYRNQFFLS CLFSVPIFLF SMELTMLPPY GNWLDYKVHN MLTVRMLLRW 480 ILCTPVQFIV GRSISGCLPL CLGTSNPPAV MVATGRVLLK VFLSRVEMHS KRLISWNLSH 540 MNLWFWMIGG CMHLVHVSKP YSPSFRSLFL VDNSSHGGRV LPNSFFDKLQ TKGMAVAMVG 600 DGINDSPALV AADVGMAIGA DTDVAIEATD IVLMNSNLED VVTAIDLSRK TMSQIRLNYV

Sequence ? help Back to Top

Protein Sequence Length: 660 aa Download sequence

MPIANVIRIM RRILPPHAKI SDDAKETMQE CVSEYIAFIT GEANERCQRE QRKTVTAEDV  60
LWAMGKLGFD NYVEPLTIYL QRYRESESSD RSQFVKREER QLMDYYPPGH AGQVAMMPPP  120
PPSYGPGYYF GPQHGPPMYD PLMMGMFRDG SSSGAGGGGS SSASGAQGEN SLGGFDPVRT  180
RWGDLTRLVT SNDHHCLKKG LSCLINRRNE YIVALTIESV LGKLDGIKSA TVSPIEGQAA  240
VNYIPELINE AVEDAGFPVS EFPQHDVAVC RLRIKGRVCT SCSESVECAL RMVDGVRNAV  300
VGLSLEEAKV RFDPNLTDTS CIIQAIEDAG FGAELVSSGN DVNKLHIKLE RVDSPEDMTI  360
VQSIVESVEG VSNVKVDLAE KKVTITYDSD LTGPRSLIRC IEEAGHESKV YQASLSVPPR  420
PREAERKHEI QMYRNQFFLS CLFSVPIFLF SMELTMLPPY GNWLDYKVHN MLTVRMLLRW  480
ILCTPVQFIV GRSISGCLPL CLGTSNPPAV MVATGRVLLK VFLSRVEMHS KRLISWNLSH  540
MNLWFWMIGG CMHLVHVSKP YSPSFRSLFL VDNSSHGGRV LPNSFFDKLQ TKGMAVAMVG  600
DGINDSPALV AADVGMAIGA DTDVAIEATD IVLMNSNLED VVTAIDLSRK TMSQIRLNYV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G47670.2	5e-49	NF-YB family protein