PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PCP044073.1
Organism
Pyrus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus
Family ZF-HD
Protein Properties Length: 311aa    MW: 34196.4 Da    PI: 9.5916
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PCP044073.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer1001.7e-31103160260
  ZF-HD_dimer   2 ekvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRreveee 60 
                  ++vrY+eClkNhAas Ggh++DGCgEfmp  g+e t+ +lkCaAC+CHRnFHR+e + e
  PCP044073.1 103 SRVRYRECLKNHAASSGGHVLDGCGEFMPG-GDEDTPGSLKCAACECHRNFHRKEIDGE 160
                  689**************************9.7777*******************98765 PP
2Homeobox16.61.4e-05248308157
                  TT--SS--HHHHHHHHHHHH....HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS
     Homeobox   1 rrkRttftkeqleeLeelFe....knrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 
                  +r Rt+f++eq e + e+ e    + ++ +++e e+L +++g++ ++ kvW +N R+ +kk
  PCP044073.1 248 KRFRTKFSQEQKEKMTEVGEklgwRIQKQDEQEVEKLCSEVGIKRQVFKVWMHNNRQAMKK 308
                  789**************999776668999****************************9997 PP
Sequence ? help Back to Top
Protein Sequence    Length: 311 aa     Download sequence    
MELRGQDKVI GRMPSTLTYT PPPHRDSSSS KLSSSPDFPS AGYHGNNASL FTHPPHQTLD  60
RSRRDPDPTP VIVTPSAAPT IASGSNFKAP PAPPHPPPST AASRVRYREC LKNHAASSGG  120
HVLDGCGEFM PGGDEDTPGS LKCAACECHR NFHRKEIDGE HVSNNYYVIN QQHNSRRDSA  180
ITRLPVLIST PPSLPVHHSA ARGPSPAMMM TFGSSGGVAA ESSSEDLNMN NNLFRGANYA  240
ADAQGSKKRF RTKFSQEQKE KMTEVGEKLG WRIQKQDEQE VEKLCSEVGI KRQVFKVWMH  300
NNRQAMKKKQ M
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G18350.12e-58ZF-HD family protein