PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PCP043945.1

Organism

Pyrus communis

Taxonomic ID

23211

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus

Family

AP2

Protein Properties

Length: 879aa MW: 97990.9 Da PI: 7.3323

Description

AP2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PCP043945.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	48.5	2.2e-15	528	587	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrd.pseng...kr.krfslgkfgtaeeAakaaiaarkkleg 55 s+++GV++++++gr++A+++d s+n k+ k+++lg ++ +e Aa+a++ a++k++g PCP043945.1 528 SRFRGVSRHRWTGRYEAHLWDkGSWNPtqrKKgKQVYLGAYDEEESAARAYDLAALKYWG 587 789****************988855556447***********************98 PP
2	AP2	50	7.4e-16	630	682	1	55
AP2 1 sgykGV.rwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV r ++ +grW+A+I + g +k+ +lg++gt eeAa a++ a+ +++g PCP043945.1 630 SKYRGVaRXHHHNGRWEARIGRvF---G-NKYLYLGTYGTQEEAAHAYDIAAIEYRG 682 89***************99966...3.6***********************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 879 aa Download sequence
MAAMFNSPYF FLCLFFLSFA AFVSSNDGPT DVTNEDTMVL DLDAYWKERA QEALKEAMES 60 YHKNPEQATE EFNTGVAELL SKENTTRRNL RGNKGYNGPC MATNPIDACW RCDANWANNR 120 KKIVGCAQGF GKKATGGKDG PIYVVTVGTD NDVQNPKPGT LRHAVIQKGP LWIIFARSMV 180 IRLEQELMVT SDKTIDGRGA NVVIEEGGGI TLQFVKNVII TNLHIKMIVS KPGGMIRDSV 240 DHMGLRTKSD GDGISLFGAS NVWIDHVSMS RCADGLIDAV MASTAITISN SHFTDHDDVM 300 LFGANNAHTQ DKIMQITLAF NHFGQGLVQR MPRVRHGFFH VVNNDYNHWI MYAIGGNMNP 360 TIISQGNRFI APANAATKQV THREHTPESE WKNWEWRSEG DLMMNGAFFV ESGSGASQHP 420 AKLDMMPFQP GTFATKLTKF SGALNCVMDT SAVKSELISS GRRPLCTIEV DALVSKCVKR 480 RRRDSSAVAA ATAPGNSDQQ GDQRLKQQAQ ADQSPTSTTT TTTVKRSSRF RGVSRHRWTG 540 RYEAHLWDKG SWNPTQRKKG KQVYLGAYDE EESAARAYDL AALKYWGTST FTNFPVPDYE 600 SEIEIMNTLT KEEYLASLRR RSSGFSRGVS KYRGVARXHH HNGRWEARIG RVFGNKYLYL 660 GTYGTQEEAA HAYDIAAIEY RGINAVTNFD LSTYIRWLRP GANSLGPQEP KSNPDQPLPM 720 PTSSNGVPLR KEGRQMSMFQ PNSFAVDDID ASKNHDIFPR QQQPPMPVSP CPKSSPSPTA 780 LGLLLQSSIF KELVEKNLNG DNEESEKNDS NLLPEQNNSD NIKQILYEEM RNNPFTCPSN 840 NDVLPTLESQ EESLLPLCNS RDQPLWNGAL NMFTSPDFN

Sequence ? help Back to Top

Protein Sequence Length: 879 aa Download sequence

MAAMFNSPYF FLCLFFLSFA AFVSSNDGPT DVTNEDTMVL DLDAYWKERA QEALKEAMES  60
YHKNPEQATE EFNTGVAELL SKENTTRRNL RGNKGYNGPC MATNPIDACW RCDANWANNR  120
KKIVGCAQGF GKKATGGKDG PIYVVTVGTD NDVQNPKPGT LRHAVIQKGP LWIIFARSMV  180
IRLEQELMVT SDKTIDGRGA NVVIEEGGGI TLQFVKNVII TNLHIKMIVS KPGGMIRDSV  240
DHMGLRTKSD GDGISLFGAS NVWIDHVSMS RCADGLIDAV MASTAITISN SHFTDHDDVM  300
LFGANNAHTQ DKIMQITLAF NHFGQGLVQR MPRVRHGFFH VVNNDYNHWI MYAIGGNMNP  360
TIISQGNRFI APANAATKQV THREHTPESE WKNWEWRSEG DLMMNGAFFV ESGSGASQHP  420
AKLDMMPFQP GTFATKLTKF SGALNCVMDT SAVKSELISS GRRPLCTIEV DALVSKCVKR  480
RRRDSSAVAA ATAPGNSDQQ GDQRLKQQAQ ADQSPTSTTT TTTVKRSSRF RGVSRHRWTG  540
RYEAHLWDKG SWNPTQRKKG KQVYLGAYDE EESAARAYDL AALKYWGTST FTNFPVPDYE  600
SEIEIMNTLT KEEYLASLRR RSSGFSRGVS KYRGVARXHH HNGRWEARIG RVFGNKYLYL  660
GTYGTQEEAA HAYDIAAIEY RGINAVTNFD LSTYIRWLRP GANSLGPQEP KSNPDQPLPM  720
PTSSNGVPLR KEGRQMSMFQ PNSFAVDDID ASKNHDIFPR QQQPPMPVSP CPKSSPSPTA  780
LGLLLQSSIF KELVEKNLNG DNEESEKNDS NLLPEQNNSD NIKQILYEEM RNNPFTCPSN  840
NDVLPTLESQ EESLLPLCNS RDQPLWNGAL NMFTSPDFN

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	554	562	PTQRKKGKQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G54320.3	1e-72	AP2 family protein