PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PCP042842.1

Organism

Pyrus communis

Taxonomic ID

23211

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus

Family

CO-like

Protein Properties

Length: 415aa MW: 45098 Da PI: 6.4937

Description

CO-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PCP042842.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	26.1	1.7e-08	47	89	5	41
zf-B_box 5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htvvp 41 +C+++++++++ C++ ++ lC++C +H+ H++++ PCP042842.1 47 ICERCNSQPASVRCTEERVSLCQNCDWMGHQAstsasgHKRQT 89 8*****************************7788888898765 PP
2	CCT	58.5	2.3e-20	356	399	1	44
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 R +a++RYkeK+k RkFeK++rY+sRKa+A+ R+RvKGrF k+ PCP042842.1 356 RSNAVMRYKEKKKARKFEKRVRYASRKARADVRKRVKGRFIKAG 399 899*************************************9975 PP

Sequence ? help Back to Top
Protein Sequence Length: 415 aa Download sequence
MGYLCDYCQV QRSMVHCRSD AACLCLSCDR NVHSANALSR RHLRTLICER CNSQPASVRC 60 TEERVSLCQN CDWMGHQAST SASGHKRQTL NCYSGCPSSA ELSSIWSFVS DLPSNGESTC 120 EQEMGLMSIA DNGTRSDWSQ AESNTRQSAS GADEVNAAHS MEKSGILVGS SSVPERSHAR 180 HVVGQLSGSV NASLPKLYSH GGKGTGLPED DDLYDDLDMD EMELNLENYE ELFGVSLNHS 240 EELFKNGGID SLFGAKNVSR DCQDAVAAEG SSIGLGNAPQ PACSNEASVD SVMSTKTDPV 300 ICFPAKQAHS NLSFSGVTGE SSAGDCQDCG ASSKLLMGEP PWCHPCPESS TQSANRSNAV 360 MRYKEKKKAR KFEKRVRYAS RKARADVRKR VKGRFIKAGE AYDYDPLNQA RTRSY

Sequence ? help Back to Top

Protein Sequence Length: 415 aa Download sequence

MGYLCDYCQV QRSMVHCRSD AACLCLSCDR NVHSANALSR RHLRTLICER CNSQPASVRC  60
TEERVSLCQN CDWMGHQAST SASGHKRQTL NCYSGCPSSA ELSSIWSFVS DLPSNGESTC  120
EQEMGLMSIA DNGTRSDWSQ AESNTRQSAS GADEVNAAHS MEKSGILVGS SSVPERSHAR  180
HVVGQLSGSV NASLPKLYSH GGKGTGLPED DDLYDDLDMD EMELNLENYE ELFGVSLNHS  240
EELFKNGGID SLFGAKNVSR DCQDAVAAEG SSIGLGNAPQ PACSNEASVD SVMSTKTDPV  300
ICFPAKQAHS NLSFSGVTGE SSAGDCQDCG ASSKLLMGEP PWCHPCPESS TQSANRSNAV  360
MRYKEKKKAR KFEKRVRYAS RKARADVRKR VKGRFIKAGE AYDYDPLNQA RTRSY

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G07650.2	1e-115	CO-like family protein