PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PCP042615.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus
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Family | HB-PHD | ||||||||
Protein Properties | Length: 1070aa MW: 117797 Da PI: 4.8101 | ||||||||
Description | HB-PHD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 42.4 | 1.2e-13 | 927 | 978 | 5 | 56 |
SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 5 ttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +++ + +++L + F++n+yp+++++e LA++lg+ +qV+ WF N R +k PCP042615.1 927 RKLGEAATQRLSKSFKENHYPDRSMKESLARELGIMANQVSKWFENARHCWK 978 55667789****************************************9887 PP | |||||||
2 | PHD | 36.3 | 1.2e-12 | 541 | 596 | 1 | 51 |
SBTTTSS..TCTTSSEEEBSS.SSSEEETTTSTSSSSHHSHHSS..TBSSHHHHTT CS PHD 1 rCkvCgk..sdeegelvlCdg.CkewfHlkClglkleseekpeg..ewlCeeCkek 51 +C+ Cg+ +++++lCdg C++ fH+ Cl+++l se++p + wlC+ C++k PCP042615.1 541 FCAKCGSkdVSLQNDIILCDGaCDRGFHQFCLEPSLLSEDIPPDdeGWLCPGCDCK 596 6999**964444********66*******************99999*******985 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 1070 aa Download sequence |
MADTAQLDIP PECDSSHATK CQEEGTSGQM HEIGSERQCS EPTKQNIGCI IVQNELREIC 60 NAGEQSQSLS ENVTENSHLE QLGLPSEDVS KSSQSGAENV FAKQGYQSIS GYKQDESLQT 120 TAAVFPCTMK DKLQSFSGNV SENSLIDQME MPCEDLGVNS PTHKSSCSGQ LPLEQKNDCG 180 FGTSSSDLAE EKHPSASDHV QNDQLQAIIQ VPICGSNEHL QSSSENVNRT SLNKQAGLPP 240 EDLSKTCQTD KVSCCNQTTL QEINEFGCGS VHGEPETQKD QLDSVPVHNN EVTTTEVAPS 300 SIVFEQSRPC IEAMTQDSPT GHLELPLEDA SKCPPIDKEM EPLPADVTQN SSLEKTEKPS 360 KNAPKDKQNP KSRKKKYVSK SSVGSDRVLR SKTGEKTKNP KLSNDVSTLE SSNSVANPSK 420 VEGKRRKKRK KRQRNKVIDD EFSRVRKHLR YLLNRISYEK SLIDAYSGEG WKGSSLEKLK 480 PEKELQRATS EILRRKLKIR DLFQHLDSLC SEGMFPESLF DSEGQIDSED CIKTYIIGQI 540 FCAKCGSKDV SLQNDIILCD GACDRGFHQF CLEPSLLSED IPPDDEGWLC PGCDCKVDCF 600 DLLNDSQGTD LSVADSWEKV FPEVAAAASG HNQEHTHGLP SDDSDDNDYD PDGPETDDEV 660 QGEESSSDDE SKYASASDGL ETPKNNDKQY LGLPSDDSED DDYNPDAPEV TNELKKESSS 720 SDFTSDSEDL GASLDDNNMS AEDVESPKSM SLDESGPLGG SGKQSSRHGQ KKQPLKDELL 780 SLLESGPGQG GAAPVSGKRH IERLNYKKLH DETYGNVRTD SSDDEEWNDT AGPRKRKKVT 840 TQAPTMSPNR DSSNVKNVMI TNNIKHDLDE NENTPKRTPR GNKNTPKRAH RKSKVEDTSN 900 LSNKSQKGST QSAPTSEKGG SSRSTYRKLG EAATQRLSKS FKENHYPDRS MKESLARELG 960 IMANQVSKWF ENARHCWKVS VDKSAAGNGT PLPQTNGKQL EQGDTIIGDS DRSGAQDKEL 1020 PRTDDRKRKA ITPNNRKRKR KSDDPDPENK TPETNRKGES EEIAPLTDAL |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 424 | 430 | KRRKKRK |
2 | 424 | 432 | KRRKKRKKR |
3 | 425 | 431 | KRRKKRK |
4 | 426 | 432 | KRRKKRK |
5 | 427 | 431 | KKRKK |
6 | 834 | 838 | KKRKK |
7 | 834 | 838 | RKRKK |
8 | 1026 | 1041 | RKRKAITPNNRKRKRK |
9 | 1027 | 1042 | RKRKAITPNNRKRKRK |
10 | 1036 | 1041 | RKRKRK |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G19510.1 | 1e-120 | HB-PHD family protein |