PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PCP042615.1

Organism

Pyrus communis

Taxonomic ID

23211

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus

Family

HB-PHD

Protein Properties

Length: 1070aa MW: 117797 Da PI: 4.8101

Description

HB-PHD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PCP042615.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	42.4	1.2e-13	927	978	5	56
SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 5 ttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +++ + +++L + F++n+yp+++++e LA++lg+ +qV+ WF N R +k PCP042615.1 927 RKLGEAATQRLSKSFKENHYPDRSMKESLARELGIMANQVSKWFENARHCWK 978 55667789****************************************9887 PP
2	PHD	36.3	1.2e-12	541	596	1	51
SBTTTSS..TCTTSSEEEBSS.SSSEEETTTSTSSSSHHSHHSS..TBSSHHHHTT CS PHD 1 rCkvCgk..sdeegelvlCdg.CkewfHlkClglkleseekpeg..ewlCeeCkek 51 +C+ Cg+ +++++lCdg C++ fH+ Cl+++l se++p + wlC+ C++k PCP042615.1 541 FCAKCGSkdVSLQNDIILCDGaCDRGFHQFCLEPSLLSEDIPPDdeGWLCPGCDCK 596 6999964444****66***************99999*****985 PP

Sequence ? help Back to Top
Protein Sequence Length: 1070 aa Download sequence
MADTAQLDIP PECDSSHATK CQEEGTSGQM HEIGSERQCS EPTKQNIGCI IVQNELREIC 60 NAGEQSQSLS ENVTENSHLE QLGLPSEDVS KSSQSGAENV FAKQGYQSIS GYKQDESLQT 120 TAAVFPCTMK DKLQSFSGNV SENSLIDQME MPCEDLGVNS PTHKSSCSGQ LPLEQKNDCG 180 FGTSSSDLAE EKHPSASDHV QNDQLQAIIQ VPICGSNEHL QSSSENVNRT SLNKQAGLPP 240 EDLSKTCQTD KVSCCNQTTL QEINEFGCGS VHGEPETQKD QLDSVPVHNN EVTTTEVAPS 300 SIVFEQSRPC IEAMTQDSPT GHLELPLEDA SKCPPIDKEM EPLPADVTQN SSLEKTEKPS 360 KNAPKDKQNP KSRKKKYVSK SSVGSDRVLR SKTGEKTKNP KLSNDVSTLE SSNSVANPSK 420 VEGKRRKKRK KRQRNKVIDD EFSRVRKHLR YLLNRISYEK SLIDAYSGEG WKGSSLEKLK 480 PEKELQRATS EILRRKLKIR DLFQHLDSLC SEGMFPESLF DSEGQIDSED CIKTYIIGQI 540 FCAKCGSKDV SLQNDIILCD GACDRGFHQF CLEPSLLSED IPPDDEGWLC PGCDCKVDCF 600 DLLNDSQGTD LSVADSWEKV FPEVAAAASG HNQEHTHGLP SDDSDDNDYD PDGPETDDEV 660 QGEESSSDDE SKYASASDGL ETPKNNDKQY LGLPSDDSED DDYNPDAPEV TNELKKESSS 720 SDFTSDSEDL GASLDDNNMS AEDVESPKSM SLDESGPLGG SGKQSSRHGQ KKQPLKDELL 780 SLLESGPGQG GAAPVSGKRH IERLNYKKLH DETYGNVRTD SSDDEEWNDT AGPRKRKKVT 840 TQAPTMSPNR DSSNVKNVMI TNNIKHDLDE NENTPKRTPR GNKNTPKRAH RKSKVEDTSN 900 LSNKSQKGST QSAPTSEKGG SSRSTYRKLG EAATQRLSKS FKENHYPDRS MKESLARELG 960 IMANQVSKWF ENARHCWKVS VDKSAAGNGT PLPQTNGKQL EQGDTIIGDS DRSGAQDKEL 1020 PRTDDRKRKA ITPNNRKRKR KSDDPDPENK TPETNRKGES EEIAPLTDAL

Sequence ? help Back to Top

Protein Sequence Length: 1070 aa Download sequence

MADTAQLDIP PECDSSHATK CQEEGTSGQM HEIGSERQCS EPTKQNIGCI IVQNELREIC  60
NAGEQSQSLS ENVTENSHLE QLGLPSEDVS KSSQSGAENV FAKQGYQSIS GYKQDESLQT  120
TAAVFPCTMK DKLQSFSGNV SENSLIDQME MPCEDLGVNS PTHKSSCSGQ LPLEQKNDCG  180
FGTSSSDLAE EKHPSASDHV QNDQLQAIIQ VPICGSNEHL QSSSENVNRT SLNKQAGLPP  240
EDLSKTCQTD KVSCCNQTTL QEINEFGCGS VHGEPETQKD QLDSVPVHNN EVTTTEVAPS  300
SIVFEQSRPC IEAMTQDSPT GHLELPLEDA SKCPPIDKEM EPLPADVTQN SSLEKTEKPS  360
KNAPKDKQNP KSRKKKYVSK SSVGSDRVLR SKTGEKTKNP KLSNDVSTLE SSNSVANPSK  420
VEGKRRKKRK KRQRNKVIDD EFSRVRKHLR YLLNRISYEK SLIDAYSGEG WKGSSLEKLK  480
PEKELQRATS EILRRKLKIR DLFQHLDSLC SEGMFPESLF DSEGQIDSED CIKTYIIGQI  540
FCAKCGSKDV SLQNDIILCD GACDRGFHQF CLEPSLLSED IPPDDEGWLC PGCDCKVDCF  600
DLLNDSQGTD LSVADSWEKV FPEVAAAASG HNQEHTHGLP SDDSDDNDYD PDGPETDDEV  660
QGEESSSDDE SKYASASDGL ETPKNNDKQY LGLPSDDSED DDYNPDAPEV TNELKKESSS  720
SDFTSDSEDL GASLDDNNMS AEDVESPKSM SLDESGPLGG SGKQSSRHGQ KKQPLKDELL  780
SLLESGPGQG GAAPVSGKRH IERLNYKKLH DETYGNVRTD SSDDEEWNDT AGPRKRKKVT  840
TQAPTMSPNR DSSNVKNVMI TNNIKHDLDE NENTPKRTPR GNKNTPKRAH RKSKVEDTSN  900
LSNKSQKGST QSAPTSEKGG SSRSTYRKLG EAATQRLSKS FKENHYPDRS MKESLARELG  960
IMANQVSKWF ENARHCWKVS VDKSAAGNGT PLPQTNGKQL EQGDTIIGDS DRSGAQDKEL  1020
PRTDDRKRKA ITPNNRKRKR KSDDPDPENK TPETNRKGES EEIAPLTDAL

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	424	430	KRRKKRK
2	424	432	KRRKKRKKR
3	425	431	KRRKKRK
4	426	432	KRRKKRK
5	427	431	KKRKK
6	834	838	KKRKK
7	834	838	RKRKK
8	1026	1041	RKRKAITPNNRKRKRK
9	1027	1042	RKRKAITPNNRKRKRK
10	1036	1041	RKRKRK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G19510.1	1e-120	HB-PHD family protein