PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PCP042238.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus
Family C3H
Protein Properties Length: 450aa    MW: 50449.9 Da    PI: 8.2968
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PCP042238.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH24.16.1e-08364384626
                  -SGGGGTS--TTTTT-SS-SS CS
      zf-CCCH   6 CrffartGtCkyGdrCkFaHg 26 
                  C++f+ +G C++Gd+Ck+ H+
  PCP042238.1 364 CNRFFNMGSCSHGDSCKYLHP 384
                  ********************8 PP

Sequence ? help Back to Top
Protein Sequence    Length: 450 aa     Download sequence    
MASVGVAPTS SRREPSGHVV GVDKLPEEMN DMKIRDDKEM ESTVAVVDGN GTETGHIIVT  60
TIGGRNGQPK QTISYMAERV VGHGSFGVVF QAKCLETGET VAIKKVLQDK RYKNRELQTM  120
RLLDHPNVVS LKHCFFSTTE KDELYLNLVL EYVPETVHRV IKHYNKLNQR MPLIYVKLYT  180
YQIFRSLSYI HRCIGVCHRD IKPQNLLVNP HTHQVKLCDF GSAKVLVKGE PNISYICSRY  240
YRAPELIFGA TEYTSAIDVW SVGCVLAELL LGQPLFPGES GVDQLVEIIK VLGTPTREEI  300
KCMNPNYTEF KFPQIKAHPW HKIFHKRMPP EAVDLVSRLL QYSPNLRCTA IPTMLTQRAT  360
KGVCNRFFNM GSCSHGDSCK YLHPNNSQQD TVLIDTNQSS TFQENQSVGG SSLPDVVVRD  420
HTGTSSSNLP PSLMPPPEGG HPRLPFVGWG
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G12020.23e-17WRKY family protein