PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | PCP042238.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus
|
||||||||
Family | C3H | ||||||||
Protein Properties | Length: 450aa MW: 50449.9 Da PI: 8.2968 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 24.1 | 6.1e-08 | 364 | 384 | 6 | 26 |
-SGGGGTS--TTTTT-SS-SS CS zf-CCCH 6 CrffartGtCkyGdrCkFaHg 26 C++f+ +G C++Gd+Ck+ H+ PCP042238.1 364 CNRFFNMGSCSHGDSCKYLHP 384 ********************8 PP |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 450 aa Download sequence |
MASVGVAPTS SRREPSGHVV GVDKLPEEMN DMKIRDDKEM ESTVAVVDGN GTETGHIIVT 60 TIGGRNGQPK QTISYMAERV VGHGSFGVVF QAKCLETGET VAIKKVLQDK RYKNRELQTM 120 RLLDHPNVVS LKHCFFSTTE KDELYLNLVL EYVPETVHRV IKHYNKLNQR MPLIYVKLYT 180 YQIFRSLSYI HRCIGVCHRD IKPQNLLVNP HTHQVKLCDF GSAKVLVKGE PNISYICSRY 240 YRAPELIFGA TEYTSAIDVW SVGCVLAELL LGQPLFPGES GVDQLVEIIK VLGTPTREEI 300 KCMNPNYTEF KFPQIKAHPW HKIFHKRMPP EAVDLVSRLL QYSPNLRCTA IPTMLTQRAT 360 KGVCNRFFNM GSCSHGDSCK YLHPNNSQQD TVLIDTNQSS TFQENQSVGG SSLPDVVVRD 420 HTGTSSSNLP PSLMPPPEGG HPRLPFVGWG |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G12020.2 | 3e-17 | WRKY family protein |