PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PCP041653.1

Organism

Pyrus communis

Taxonomic ID

23211

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus

Family

C3H

Protein Properties

Length: 565aa MW: 64703.9 Da PI: 5.3108

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PCP041653.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	28.4	2.8e-09	201	219	9	27
GGGTS--TTTTT-SS-SSS CS zf-CCCH 9 fartGtCkyGdrCkFaHgp 27 +++tG Ck+G++CkF+H++ PCP041653.1 201 YLKTGNCKFGSNCKFNHPR 219 89***************96 PP
2	zf-CCCH	27.3	6.4e-09	510	534	2	26
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 + + C +++r+GtCky ++C F+H+ PCP041653.1 510 GKKDCWYYMRNGTCKYENKCLFNHP 534 667899******************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 565 aa Download sequence
MGYEHLEVEL EGTDGHGTGG GPMKVTVMVN SGHISQSLTQ VKGRDGEARH FRSGRLSELY 60 ESFAVPLNPI NNNRIDDRSD DRSGRPPSIP SPLPSDLNPE ILDWIRTLDP AELERIYAIL 120 DKIQQFDPAE ILGLSLKEKN KKEEEKRRET EMENEKEREN ESSGIGGENQ NGGEVEKEGV 180 EESSTRNQYP LRPEPGDCWW YLKTGNCKFG SNCKFNHPRR RKNKQKKVSK DKAKQREDLA 240 EKQDQTESKV CNCIDDQSDH PLFIQSPLPS DLNPEILALD PTELDRTYAI FDKFQQFDPA 300 FENWNFNPAI VDEIWELSLK EWEKKEEEEK ERESEKENEM EREGKSSGIG GGNQNGGDME 360 NEVVVESSRR NQYPLRPKAG DCSLYLKTGS XNICGVGAHF VFLGVLNFVR IDSKWRHISY 420 LLEMMFFFHM HLCDDIXNIC VIGAHIVFLG VLNFYHIYKK VSKNKAKQKE ELAEKQDRTE 480 SKHCPGRRRG EPSVAPALEL NFLGLPIRPG KKDCWYYMRN GTCKYENKCL FNHPDPTPAE 540 ESHPQSAYES HGIHSETTEF ITPVL

Sequence ? help Back to Top

Protein Sequence Length: 565 aa Download sequence

MGYEHLEVEL EGTDGHGTGG GPMKVTVMVN SGHISQSLTQ VKGRDGEARH FRSGRLSELY  60
ESFAVPLNPI NNNRIDDRSD DRSGRPPSIP SPLPSDLNPE ILDWIRTLDP AELERIYAIL  120
DKIQQFDPAE ILGLSLKEKN KKEEEKRRET EMENEKEREN ESSGIGGENQ NGGEVEKEGV  180
EESSTRNQYP LRPEPGDCWW YLKTGNCKFG SNCKFNHPRR RKNKQKKVSK DKAKQREDLA  240
EKQDQTESKV CNCIDDQSDH PLFIQSPLPS DLNPEILALD PTELDRTYAI FDKFQQFDPA  300
FENWNFNPAI VDEIWELSLK EWEKKEEEEK ERESEKENEM EREGKSSGIG GGNQNGGDME  360
NEVVVESSRR NQYPLRPKAG DCSLYLKTGS XNICGVGAHF VFLGVLNFVR IDSKWRHISY  420
LLEMMFFFHM HLCDDIXNIC VIGAHIVFLG VLNFYHIYKK VSKNKAKQKE ELAEKQDRTE  480
SKHCPGRRRG EPSVAPALEL NFLGLPIRPG KKDCWYYMRN GTCKYENKCL FNHPDPTPAE  540
ESHPQSAYES HGIHSETTEF ITPVL

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	218	222	PRRRK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G48440.1	2e-17	C3H family protein