PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PCP041625.1
Organism
Pyrus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus
Family GRAS
Protein Properties Length: 712aa    MW: 80147.2 Da    PI: 5.751
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PCP041625.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS365.38.3e-1123397082372
         GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlar.svselykalppsetseknsseelaalklfsevsPilkfshlta 98 
                   +lL+ecAeav+s d+++a++lL+r+++++sp+gd++qRla+yf+ +L+arla+   ++ y+ l +       ++e l+a+++++ ++P+ k+ h+ a
  PCP041625.1 339 CKLLTECAEAVASYDQQAANELLKRIRQHSSPYGDSTQRLAHYFADGLEARLAGaRNPSYYSPLMMHIP----ETEILKAYQVYVTACPFKKMVHFFA 432
                  589***************************************************667777777666666....589********************** PP

         GRAS  99 NqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeL 194
                  N++I++ +e+++r+HiiDf+i +GlQWp+L+q+L+++++gpp+l iT ++ p++g   +e +eetg+rL+k++e+ +vpfe+nv +ak++e+++le++
  PCP041625.1 433 NRTIMKTAEKATRLHIIDFGICYGLQWPCLIQSLSEKTGGPPKLCITLIEVPQPGfrPAEIIEETGRRLTKYCERYNVPFEYNV-IAKKWETIRLEDI 529
                  ******************************************************9*99*************************9.7************ PP

         GRAS 195 rvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgr 292
                  r++++E+++Vn++++l++++de+v  +++rd++L+l+k+++P+++ +   +  +n++ F++rf +al ++ a+fd +ea++pre+e+r+  Er+++gr
  PCP041625.1 530 RIDRNEVTVVNCMFRLKQIPDETVMANNPRDAILNLIKRINPDLFMHGVVNGTYNAPAFVTRFKQALFHFHAFFDIYEATVPREDEQRMLFERAVFGR 627
                  ************************************************************************************************** PP

         GRAS 293 eivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSa 372
                  +i+nvvaceg+er+er et+++W++r  + GFk++pl+    +++k+l + ++    + +e++ +++++gWk+r +++++a
  PCP041625.1 628 DIMNVVACEGQERVERPETYKQWQARYARIGFKQLPLDRALLQKVKTLSKVMGyHSDFLIEDDGQWMLQGWKGRIVLALTA 708
                  ************************************************999988888******************999876 PP
Sequence ? help Back to Top
Protein Sequence    Length: 712 aa     Download sequence    
MDTLYVERFS APIEGFEFGD GSNSVCCDEN LAGGFKENHE STNPNSLPSN FDHPSVSSTS  60
LSAGSDADNI DISDCNQPVL KYISDILLEE DLEGKACMLQ QSLALQMAEK SFHDALNSEN  120
PPLLNQPSFS VYQSFEDSDV GFHSSDGSVA SFYSSNGSIS ANSGCVWDVS QPCHVQSSLF  180
EPISDTLFVS DSFSVEEGIK FVPKESCEVI DPERDQLMPS GSDQWPRGPC TLIRDLASKN  240
GYNSTNGSKG KKNHRREDGY DTEEGRRNKQ SAAACDSSDL QDIYDKVLQS VNHEPDSCSH  300
DESSKTKGNR TLQHKEQSKG SKASRAKKQN SNGKVVDLCK LLTECAEAVA SYDQQAANEL  360
LKRIRQHSSP YGDSTQRLAH YFADGLEARL AGARNPSYYS PLMMHIPETE ILKAYQVYVT  420
ACPFKKMVHF FANRTIMKTA EKATRLHIID FGICYGLQWP CLIQSLSEKT GGPPKLCITL  480
IEVPQPGFRP AEIIEETGRR LTKYCERYNV PFEYNVIAKK WETIRLEDIR IDRNEVTVVN  540
CMFRLKQIPD ETVMANNPRD AILNLIKRIN PDLFMHGVVN GTYNAPAFVT RFKQALFHFH  600
AFFDIYEATV PREDEQRMLF ERAVFGRDIM NVVACEGQER VERPETYKQW QARYARIGFK  660
QLPLDRALLQ KVKTLSKVMG YHSDFLIEDD GQWMLQGWKG RIVLALTALK PA
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07530.11e-176GRAS family protein