PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PCP040000.1
Organism
Pyrus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus
Family HD-ZIP
Protein Properties Length: 689aa    MW: 75960.8 Da    PI: 6.5546
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PCP040000.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox672.6e-21120175156
                  TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
     Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                  +++ +++t++q++eLe+lF+++++p++++r eL+++l+L++rqVk+WFqNrR+++k
  PCP040000.1 120 KKRYHRHTPQQIQELEALFKECPHPDEKQRLELSRRLNLETRQVKFWFQNRRTQMK 175
                  688999***********************************************999 PP
2START205.71.9e-643275501205
                  HHHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEEEEE CS
        START   1 elaeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla....kaetlevi 85 
                  ela++a++elvk+a+ +ep+W +s     e +n +e++++f++  +     + +ea+r+sg+v+ ++ +lve+l+d++ +W e+++    + +t++vi
  PCP040000.1 327 ELALAAMDELVKMAQTDEPLWLRSLegarEVLNHEEYMRNFTPCIGlkpngFVSEASRESGMVIINSLTLVETLMDSN-RWLEMFPgviaRTSTTDVI 423
                  5899**************************************99989*******************************.******************* PP

                  CTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSX CS
        START  86 ssg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwvehvdlkgrl 176
                  ssg      galqlm aelq lsplvp R++ f+R+++q+ +g+w++vdvSvd  ++ +  + ++ +++lpSg+++++++ng+skvtwveh+++++++
  PCP040000.1 424 SSGmggtrnGALQLMHAELQILSPLVPvREVNFLRFCKQHAEGVWAVVDVSVDAIRDTSGVPTFMNCRRLPSGCVVQDMPNGYSKVTWVEHAEYDESQ 521
                  *********************************************************999************************************** PP

                  XHHHHHHHHHHHHHHHHHHHHHHTXXXXX CS
        START 177 phwllrslvksglaegaktwvatlqrqce 205
                  +h l+r+l++sg+ +ga++wvatlqrq e
  PCP040000.1 522 VHHLYRPLLSSGMGFGAQRWVATLQRQSE 550
                  **************************987 PP
Sequence ? help Back to Top
Protein Sequence    Length: 689 aa     Download sequence    
MSFGGFLDNS AGSGVGARIV ADIPYTNNSN NMPSSAIAQP RLVTQSLTKS MFNSPGLSLA  60
LQTNVDGQGD VTRVAENYEA NNGGRRSREE EHESRSGSDN MDGASGDDQD AADNHHPRKK  120
KRYHRHTPQQ IQELEALFKE CPHPDEKQRL ELSRRLNLET RQVKFWFQNR RTQMKTQLER  180
HENSLLRQEN DKLRAENMSI REAMRNPICS NCGGPAIIGD ISLEEQHLRI ENARLKDDLD  240
RVCALAGKFL GRPISSLAAS MGPPLPSSTL ELGVGSNGFG GMSNVATSMS MGNDFGGGIG  300
SAMSVVSHGR PSVTGLDRSM ERSIFLELAL AAMDELVKMA QTDEPLWLRS LEGAREVLNH  360
EEYMRNFTPC IGLKPNGFVS EASRESGMVI INSLTLVETL MDSNRWLEMF PGVIARTSTT  420
DVISSGMGGT RNGALQLMHA ELQILSPLVP VREVNFLRFC KQHAEGVWAV VDVSVDAIRD  480
TSGVPTFMNC RRLPSGCVVQ DMPNGYSKVT WVEHAEYDES QVHHLYRPLL SSGMGFGAQR  540
WVATLQRQSE CQAILMSSSV PSRDHTAITA SGRRSMLKLA HRMTDNFCAG VCASTVHKWT  600
KLNAGNVDED VRVMTRESLD DPGEPPGVVL SAATSVWLPV SPQRLFDFLR DERLRSEWDI  660
LSNGGPMQEM AHIAKGQDPG NCVSLLRAR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G61150.10.0HD-ZIP family protein