PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PCP039833.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus
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Family | LBD | ||||||||
Protein Properties | Length: 224aa MW: 24783.1 Da PI: 8.9464 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 135.5 | 2e-42 | 43 | 142 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallk 98 +CaaCk+lrr+Ca++C+++pyf ++++kfa vhk+FGasnv+k+l ++pe++r da++slvyeA++r+rdPvyG++gvi++lqqq+++l+ael++++ PCP039833.1 43 PCAACKLLRRRCAQECPFSPYFSPHESQKFASVHKVFGASNVSKMLMEVPETQRADAANSLVYEANVRLRDPVYGCMGVISALQQQVQSLQAELNAVR 140 7**********************************************************************************************998 PP DUF260 99 ee 100 e PCP039833.1 141 GE 142 76 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 224 aa Download sequence |
MSRERERFDE VSKKFKRETD ASHYQMGRRH MLGPPGTLNT ITPCAACKLL RRRCAQECPF 60 SPYFSPHESQ KFASVHKVFG ASNVSKMLME VPETQRADAA NSLVYEANVR LRDPVYGCMG 120 VISALQQQVQ SLQAELNAVR GEILKYKYRE ANLLPSNSHH HMALFSTSGA VSVASLPQTP 180 QPLLPLSPPP PLPPTSSSSS MYTNQQTSAA DYSSLSSENV SFFG |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G40470.1 | 3e-87 | LBD family protein |