PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PCP039816.1
Organism
Pyrus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus
Family HD-ZIP
Protein Properties Length: 698aa    MW: 77331 Da    PI: 7.0316
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PCP039816.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox59.45.9e-192576354
                 --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
     Homeobox  3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRak 54
                 +  ++t+eq+++Lee+F+ +++p+ ++r++L+++lgL+ rq+k+WFqN+R++
  PCP039816.1 25 NYYRHTTEQIRRLEEFFKCCSHPDDNQRQQLSRELGLEPRQIKFWFQNKRTQ 76
                 56689*********************************************87 PP
2START130.52e-412224442206
                  HHHHHHHHHHHHHHHC-TT-EEEE.......EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEEE CS
        START   2 laeeaaqelvkkalaeepgWvkss.......esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla....kaetle 83 
                  +a +a++elv++ + +ep+Wvks         ++n+d+   k    +        +e +++sgvv  ++a+lv  +ld++ +W e ++    ka+t+e
  PCP039816.1 222 IAASAMEELVSLFQIGEPLWVKSTadgryflNGDNYDKLFPKA---NQfktsgACVESSKDSGVVAINAATLVDMFLDSN-KWEELFPtiltKAKTIE 315
                  67899*******************9999655555666555555...434558889*************************.*******9********* PP

                  EECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--..-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE-- CS
        START  84 vissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe.sssvvRaellpSgiliepksnghskvtwvehvdlk 173
                  v++sg      g l lm+ ++  lsplv+ Rdf+f+Ry++q ++g+wvivdvS + ++  ++ +s + R   lpSg++i++ s g s+vtw+ehv ++
  PCP039816.1 316 VLESGmmknrnGCLLLMYEQMHILSPLVApRDFYFLRYCQQIERGTWVIVDVSHNFPKGSSSnQSLSWR---LPSGCMIKDISCGCSRVTWIEHVAVD 410
                  ****************************99****************************99875666666...************************** PP

                  SSXX.HHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
        START 174 grlp.hwllrslvksglaegaktwvatlqrqcek 206
                   ++  h l+r lv + +a ga +w  tl+r ce+
  PCP039816.1 411 NKTQaHRLYRDLVCRNVAYGADRWIVTLKRTCER 444
                  99998***************************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 698 aa     Download sequence    
MELQGNGGAS GDGREASNSG RGNKNYYRHT TEQIRRLEEF FKCCSHPDDN QRQQLSRELG  60
LEPRQIKFWF QNKRTQTQAQ NESADNTVLR KDNERIQWEN YAIIKALKSV LCPTCGGPPF  120
GEEARQLSLQ RLQLENAYLK EEASIWNHDK VASLLSKYIG KPPSQIESLA SVVGSTLDLS  180
LGYSTNQGII GSPPLNLNLT SPALAYQIKE IPEREKTLMA DIAASAMEEL VSLFQIGEPL  240
WVKSTADGRY FLNGDNYDKL FPKANQFKTS GACVESSKDS GVVAINAATL VDMFLDSNKW  300
EELFPTILTK AKTIEVLESG MMKNRNGCLL LMYEQMHILS PLVAPRDFYF LRYCQQIERG  360
TWVIVDVSHN FPKGSSSNQS LSWRLPSGCM IKDISCGCSR VTWIEHVAVD NKTQAHRLYR  420
DLVCRNVAYG ADRWIVTLKR TCERLDCLMV EVESTLVTSS EGKRSVMKLS QRMVKNFCGM  480
LSMAGKLDFP QSSEVNSSGV RVSVRKSTEP GQPHGMIVSI ATSLWLPLPS QTVFSFFRDE  540
RNRVQWDVLS NGNPVHEIAN IPTGTHPGNC ISVIRPFTPT ENNMLMLQES YTDPLGSLFV  600
YAPVDMPALN VAVSGEDSSN IPILPSGFVI SGDGRAETTG DSGHSRAGGS LLTVAFQILV  660
STPSTSKQMN MESVAIVNAL ISSTVQKIKV ALNCSSLD
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G73360.10.0HD-ZIP family protein