PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PCP039815.1
Organism
Pyrus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus
Family HD-ZIP
Protein Properties Length: 684aa    MW: 77088.1 Da    PI: 6.7541
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PCP039815.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox581.6e-182680256
                 T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
     Homeobox  2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                 +kR+++t+eq+++Lee+F ++ +p++++r++L ++lgL+ +q+ +WFqN+R++ k
  PCP039815.1 26 KKRQRHTSEQIQRLEEFFINCTHPDENDRKQLCRELGLEPNQIMFWFQNKRTQIK 80
                 89*************************************************9877 PP
2START132.54.9e-422094312206
                  HHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEEEEEC CS
        START   2 laeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla....kaetlevis 86 
                  +a +a++elvk+ + e+p W ks+      +n+d + + f+++k       ++e +++sgvv   +a lv  +ld++ +W e ++     a+t+ev++
  PCP039815.1 209 IAASAMEELVKLFQIEKPIWIKSPtngrYFLNRDNYDKMFPKAKHfknsrAQVESSKDSGVVHISAAHLVDMFLDSN-KWEELFPtivtTAKTIEVLE 305
                  67899*******************888745566666666665555777888**************************.******99999********* PP

                  TT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--..-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSX CS
        START  87 sg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe.sssvvRaellpSgiliepksnghskvtwvehvdlkgrl 176
                  +g      g lqlm+ +   lsplv  Rdf+f+R+++q + g+wvi+dvS +s +     ++++ R   lpSg++ie++ ng+ k+tw+eh+++++++
  PCP039815.1 306 TGmsgnrnGCLQLMYEQIHILSPLVLpRDFYFLRHCQQTEPGTWVIADVSYNSAKGSFArQPQSWR---LPSGCMIEDMHNGYAKITWIEHMEVDDKT 400
                  ************************966**************************9998778999999...***************************99 PP

                  X.HHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
        START 177 p.hwllrslvksglaegaktwvatlqrqcek 206
                    h l+r l+ s++a ga +w  tlqr ce+
  PCP039815.1 401 QtHRLYRDLICSSVAYGAERWIVTLQRMCER 431
                  98***************************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 684 aa     Download sequence    
MELPRNSNYQ SSGDGHEASS SRKGNKKRQR HTSEQIQRLE EFFINCTHPD ENDRKQLCRE  60
LGLEPNQIMF WFQNKRTQIK AQTERAETTA LRQLNENIRR ENFAMKETLK NVVCPTCDGL  120
PISGEEQQLS LQRLQLENSY LKQEHDKLAN LLPKYNATSV VGSSLNLSPG CSTNQVIARP  180
PLNLSPTNPA LAYQLKENAE MEKALMKDIA ASAMEELVKL FQIEKPIWIK SPTNGRYFLN  240
RDNYDKMFPK AKHFKNSRAQ VESSKDSGVV HISAAHLVDM FLDSNKWEEL FPTIVTTAKT  300
IEVLETGMSG NRNGCLQLMY EQIHILSPLV LPRDFYFLRH CQQTEPGTWV IADVSYNSAK  360
GSFARQPQSW RLPSGCMIED MHNGYAKITW IEHMEVDDKT QTHRLYRDLI CSSVAYGAER  420
WIVTLQRMCE RFDCLMDDVG STCVFGGVVT LPEGKKSLMK LSQRMVKNFC GMLSMEGKLD  480
FPQLSEVDSS GIRVSVHKSA EIGQPHGTIV SVATSLWLPL SSQTIFNFFR DEKTRIQWDV  540
LFHGNPVHEI AYISTGTHPE NHISIIRPFI PTEDNMLMLQ ECHIDPLGSF IIYAPVDIQT  600
LNVAISGEDS SNIAILPSGF LISGDGRPEM GDACGSLVTV AFHILVSSPT TSERMNMELV  660
ATVNTLISST VKKIKVALKC SGLD
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G73360.10.0HD-ZIP family protein