PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PCP039324.1

Organism

Pyrus communis

Taxonomic ID

23211

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus

Family

HD-ZIP

Protein Properties

Length: 221aa MW: 25652 Da PI: 8.9865

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PCP039324.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	59.4	5.8e-19	72	125	3	56
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k+ ++t++qle Le+ Fe++ +++ +++ +L+++lgL+ r++ vWFqNrRa++k PCP039324.1 72 KKKRLTSDQLESLERSFEEEIKLDPDRKMKLSRELGLQPRKIAVWFQNRRARWK 125 55679************************************************9 PP
2	HD-ZIP_I/II	109.5	2.3e-35	72	156	2	86
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekevee 86 kk+rl+++q+++LE+sFeee kL+p+rK++l+reLglqpr++avWFqnrRAR+k+kqlE+ y+aLk++yd +++ ++ L++ev++ PCP039324.1 72 KKKRLTSDQLESLERSFEEEIKLDPDRKMKLSRELGLQPRKIAVWFQNRRARWKAKQLERLYDALKQEYDVVMKLKTILRDEVAR 156 9******************************************************************************999875 PP

Sequence ? help Back to Top
Protein Sequence Length: 221 aa Download sequence
MDWKTSLRHL VSRPEPSFGF LNNYNCYDHY SPGMEMKHQA MISETSSQGG LVPGLMDRNN 60 HQSGYGCSSH DKKKRLTSDQ LESLERSFEE EIKLDPDRKM KLSRELGLQP RKIAVWFQNR 120 RARWKAKQLE RLYDALKQEY DVVMKLKTIL RDEVARKQVS TRYTEISGEE TVESTSVAIR 180 SANKAGGKNQ HQIAECNYLY INVEEYNPVS PPFWGNLPSY P

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	72	101	KKKRLTSDQLESLERSFEEEIKLDPDRKMK
2	120	128	RRARWKAKQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G03790.1	2e-48	HD-ZIP family protein